Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_D21
         (547 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical ...    39   0.002
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    32   0.31 
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    32   0.31 
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    32   0.31 
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    32   0.31 
AF040661-1|AAK82922.2|  508|Caenorhabditis elegans Hypothetical ...    30   1.2  
AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm (myotubu...    29   1.7  
AF003390-5|AAB54270.2|  873|Caenorhabditis elegans Hypothetical ...    28   5.0  

>AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical
           protein Y51F10.8 protein.
          Length = 204

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -1

Query: 85  AGHITRRTDARWGQRILEWLPRIERRSV 2
           AGH+ RRTD RW   + +W PR E+R V
Sbjct: 126 AGHVARRTDGRWTTLMNDWCPRDEKRPV 153


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 85  AGHITRRTDARWGQRILEWLPRIERRSV 2
           AGH+ RR D RW   + EW P   +R V
Sbjct: 815 AGHVARRKDGRWTTLMTEWRPYGWKRPV 842


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 85   AGHITRRTDARWGQRILEWLPRIERRSV 2
            AGH+ RR D RW   + EW P   +R V
Sbjct: 990  AGHVARRKDGRWTTLMTEWRPYGWKRPV 1017


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 85  AGHITRRTDARWGQRILEWLPRIERRSV 2
           AGH+ RR D RW   + EW P   +R V
Sbjct: 729 AGHVARRKDGRWTTLMTEWRPYGWKRPV 756


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 85  AGHITRRTDARWGQRILEWLPRIERRSV 2
           AGH+ RR D RW   + EW P   +R V
Sbjct: 341 AGHVARRKDGRWTTLMTEWRPYGWKRPV 368


>AF040661-1|AAK82922.2|  508|Caenorhabditis elegans Hypothetical
           protein W10G11.19 protein.
          Length = 508

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +1

Query: 268 ELPLTEPCDQFY*RLKQKFT*EIFTDLVTIDSYIIF 375
           E P+T P D F+  L QKF  +++T+L  +DS  IF
Sbjct: 81  EEPVTFPLDTFFVELFQKFADKLYTNL-ALDSLPIF 115


>AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm
           (myotubularin) family protein 5 protein.
          Length = 1744

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 422 TIPFYLFE*IRKLVI*KIIYESIVTRSVKISHV 324
           TIP Y  E  +KL   K+I   ++ + VKI H+
Sbjct: 859 TIPLYSMESFKKLTNKKLIPTQLIEKGVKIEHI 891


>AF003390-5|AAB54270.2|  873|Caenorhabditis elegans Hypothetical
           protein R155.4 protein.
          Length = 873

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 85  PQPLQLSHHRFNSKDLF*NVVNQKALDSLTEFMGR 189
           P  LQ  HH FN + +  N+  +   D L+ F+G+
Sbjct: 42  PSGLQEPHHDFNYRGIGLNLARRTTKDELSTFIGQ 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,419,754
Number of Sequences: 27780
Number of extensions: 212616
Number of successful extensions: 431
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)