Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_D20
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    27   2.6  
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.4  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    26   3.4  
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    26   3.4  
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    26   4.5  
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   5.9  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    25   5.9  
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su...    25   7.8  

>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
 Frame = -3

Query: 430 ISHENVNSLADAKFGVKCGGGA-AQCYRQEQHCGRAYHHTETPDPAQYPIKHQSSFQL 260
           ++H     L D   G        A C+  E++C   + H   P PA +P+     + L
Sbjct: 41  LNHPTNGGLYDLALGPYLKNSVCATCHLDERYCPGHFGHIVLPIPAYHPLFFSQMYNL 98


>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 602

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 42  RHLKTHKITEIFNENTFFVLYNSVNCQFLKVTTFVKAKVDKFTFLRVY 185
           R+L    I E   +N+F +   S+   FL++   +  K    TFL++Y
Sbjct: 198 RYLSLIGIAEKMFDNSFRLCLKSIRDVFLRIFEEIDPKDTLHTFLQIY 245


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 514 ENADRWFPKDPAFGIVTRDHTHAYAEVTISHEN 416
           ENA +   +  AFG   RDH     +  IS +N
Sbjct: 531 ENASKLIKRKSAFGTELRDHADELLQTLISLQN 563


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +3

Query: 42  RHLKTHKITEIFNENTFFVLYNSVNCQFLKVTTFVKAKVDKFTFLRVYGNPSVLFVNELS 221
           +H  T   T IF+E+  ++LY S+    +KV +     +D  T +R+YG    +    LS
Sbjct: 318 KHGLTVGTTAIFDESEKYLLYGSI--VGIKVVS-----IDNGTVVRIYGKDEAVRFTRLS 370

Query: 222 M 224
           +
Sbjct: 371 L 371


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
 Frame = +3

Query: 9   GCILKIKPPCIRHLKTHKITEIFNENTFFVLYNSVNCQFLKVTTFVK-AKVDKFTFLRVY 185
           GCI   +  C+     H +   FN N    L + V+ Q +    F++  KV       V 
Sbjct: 131 GCIENPQLECLNQQDDHDLKSAFNSNPSSFLESDVDEQLMIYIPFLEVVKVHSIAITPVK 190

Query: 186 GNPS 197
           G  S
Sbjct: 191 GETS 194


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 457 HTHAYAEVTISHENVNSLADAKFG 386
           HTH + E+  SH+N  +  D  FG
Sbjct: 86  HTHTFVELQKSHQNHLTENDRNFG 109


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 402 PTPSSESSVVAARHSATARSNTVGVRTITLKLLI 301
           PTPS+  + + A  +++  SN+ G  + T  LLI
Sbjct: 268 PTPSNNGTSINANVTSSLTSNSTGKTSKTTDLLI 301


>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
           subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +3

Query: 33  PCIRHLKTHKITEIFNENTFFVLYNSVNCQFLKVTTFVKAKVDKFT 170
           P  + L ++      N   F    N V C  LK+ +F   K+D FT
Sbjct: 36  PFFQQLPSNVAAVYLNPVKFNPSENDVLCASLKIKSFETPKLDTFT 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,325,350
Number of Sequences: 5004
Number of extensions: 47470
Number of successful extensions: 120
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)