Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_D20
         (570 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024882-9|AAF60930.2|  341|Caenorhabditis elegans Hypothetical ...    28   5.4  
AF353303-1|AAK32717.1|  367|Caenorhabditis elegans GATA-like tra...    27   7.2  
AF100657-1|AAC68957.3|  367|Caenorhabditis elegans Erythroid-lik...    27   7.2  
Z82055-7|CAB04849.1|  387|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z75714-7|CAB00064.2|  270|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U28943-5|AAA68359.2|  435|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>AC024882-9|AAF60930.2|  341|Caenorhabditis elegans Hypothetical
           protein Y9C9A.5 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 222 MLYP*DVIITVHANWKLLWCLMGYCAGSG 308
           + YP D     H ++K LW  +GYC   G
Sbjct: 184 VFYPLDETGVPHLDYKHLWAYVGYCITMG 212


>AF353303-1|AAK32717.1|  367|Caenorhabditis elegans GATA-like
           transcription factorELT-6 protein.
          Length = 367

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 352 RQEQHCGRAYHHTETPDPAQYPIKHQSSFQ 263
           +Q+QH   A+HH +     Q P+K + S Q
Sbjct: 176 QQQQHQAAAHHHAQQQAREQKPVKAEESKQ 205


>AF100657-1|AAC68957.3|  367|Caenorhabditis elegans Erythroid-like
           transcription factorfamily protein 6 protein.
          Length = 367

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 352 RQEQHCGRAYHHTETPDPAQYPIKHQSSFQ 263
           +Q+QH   A+HH +     Q P+K + S Q
Sbjct: 176 QQQQHQAAAHHHAQQQAREQKPVKAEESKQ 205


>Z82055-7|CAB04849.1|  387|Caenorhabditis elegans Hypothetical
           protein T26H2.8 protein.
          Length = 387

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
 Frame = -3

Query: 247 IITSYGYNIDNSFTNKTLGL-----P*TRRNVNLSTFAFTNVVTL 128
           I T+Y   +D S  N+T+ L        R+N+  + F  TN+V L
Sbjct: 328 IYTTYRSMVDRSINNRTVNLVVQIFSVNRKNIERAYFVITNIVLL 372


>Z75714-7|CAB00064.2|  270|Caenorhabditis elegans Hypothetical
           protein ZC434.4 protein.
          Length = 270

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 496 FPKDPAFGIVTRDHTHAYAEVTISHENVNSLAD 398
           F +DP F  V +D T  Y ++  S E +  +AD
Sbjct: 133 FLEDPEFPSVLKDSTTLYRKLFPSEEQIQEMAD 165


>U28943-5|AAA68359.2|  435|Caenorhabditis elegans Hypothetical
           protein E04F6.6 protein.
          Length = 435

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -3

Query: 403 ADAKFGVKCGGGAAQCYRQEQHCGRAY 323
           A    GV  GGG    Y+Q QH G  Y
Sbjct: 368 AGKPIGVDVGGGVGPYYQQNQHVGVDY 394


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,129,396
Number of Sequences: 27780
Number of extensions: 279542
Number of successful extensions: 660
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)