Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_D18
         (380 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomy...    91   4e-20
SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces pombe...    26   2.3  
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    25   3.0  
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy...    25   4.0  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    24   7.0  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    24   7.0  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    24   9.3  
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    24   9.3  

>SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 482

 Score = 91.5 bits (217), Expect = 4e-20
 Identities = 45/95 (47%), Positives = 66/95 (69%), Gaps = 3/95 (3%)
 Frame = +2

Query: 101 EFCNYRSPLSTRYASKEMQYNFSDQKKFSTWRKLWIYLAKAEKELGL-DITDEQIAELES 277
           ++ +Y +PL+ RYAS EM + FS + + +TWR+LW+ LA AEK+LGL  ITDE I +L++
Sbjct: 3   DYGSYSTPLTARYASAEMSHLFSREMRINTWRQLWLNLAIAEKQLGLTQITDEAIEQLKA 62

Query: 278 --AIHDIDFDXASEHEKRVRHDVMAHVHTLAQRCP 376
              I   +F+ A++ EKR RHDVMAH++T     P
Sbjct: 63  HVKITAPEFEIAAKEEKRQRHDVMAHIYTYGLAAP 97


>SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 460

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = +2

Query: 203 WIYLAKAEKELGLDITDEQIAELESAIHDIDFDXASEHEKRVRHDVMAHV 352
           WI L K  +   LDI+D +  +L   + D +F   + ++    ++  A +
Sbjct: 344 WIALEKYFEVNALDISDSESEDLSDILSDSEFSIGNRNKNIGNNEYSAQI 393


>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -1

Query: 161 YIAFLWMHI*CSTVNDNYRILNFEFQSEHL 72
           + A  W    C  +N NY+   FEF  + L
Sbjct: 69  FYAVSWQRAICGPLNSNYKQSEFEFYIDDL 98


>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 156 NIILVIRRNFQLGVNYGFIL 215
           NI+ +   ++ + VNYGFIL
Sbjct: 97  NIVTICSNSYSILVNYGFIL 116


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +2

Query: 8   VTCQ--SFTICDVFE*LSNKMFTIDAPIEIQNSEFCNYRSPLST 133
           V C+  S ++ DVFE  S+          + +SEFC+  + L T
Sbjct: 488 VVCEKTSLSVADVFEKYSSLCLRDRLIYPLTSSEFCDVANSLET 531


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 259 DRRVGVCDPRHRFRXSVRAREAC 327
           DR + +CD     R  VR R+AC
Sbjct: 556 DRNLDLCDEESMRRWLVRLRQAC 578


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 12/58 (20%), Positives = 24/58 (41%)
 Frame = +2

Query: 71  IDAPIEIQNSEFCNYRSPLSTRYASKEMQYNFSDQKKFSTWRKLWIYLAKAEKELGLD 244
           +D  + + N+    +    S       +   FS++  FS WR L+++        G+D
Sbjct: 255 VDEDLNLINAYLSQFGKKRSLNELCALLSRRFSNRHTFSEWRALFMHFFPFINSEGVD 312


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 8   VTCQSFTICDVFE*LSNKMFTIDAPIEIQ 94
           +    F I D+ E L + MFTI A  EIQ
Sbjct: 471 IVSMQFQINDLNEQLRDLMFTISASQEIQ 499


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,466,853
Number of Sequences: 5004
Number of extensions: 26282
Number of successful extensions: 76
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)