Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_D18
(380 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0012 - 4914223-4914468,4914511-4914587,4914671-4914732,491... 29 1.6
10_08_0992 + 22079548-22079880,22080668-22080753,22081614-22081779 28 2.9
08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,452... 28 2.9
03_02_0991 - 13034540-13034830,13035057-13035202,13035203-130353... 27 3.8
06_03_0541 - 21944696-21944851,21944939-21945142,21945438-219474... 27 5.0
01_01_0062 + 497728-497922,499444-499481,499576-499598,501156-50... 27 6.6
04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931 26 8.7
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622... 26 8.7
>03_02_0012 -
4914223-4914468,4914511-4914587,4914671-4914732,
4914825-4915018,4915153-4915439,4915520-4915646,
4916216-4916446,4917210-4917384,4917461-4917668,
4917745-4917793,4918016-4918300
Length = 646
Score = 28.7 bits (61), Expect = 1.6
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -3
Query: 339 TSCLTRFSCSDAXSKSMSWIADSNSAICSSVMSRPN 232
TS L + S K M W+ D A CS V+ N
Sbjct: 505 TSFLCFVNSSSIKEKIMGWVTDEREAFCSVVLDMSN 540
>10_08_0992 + 22079548-22079880,22080668-22080753,22081614-22081779
Length = 194
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 251 DEQIAELESAIHDIDFDXASEHEKRVRHDVM-AHVHTLAQRC 373
DEQ+ L+ ++ F A+E ++ +RH+ + +H + RC
Sbjct: 58 DEQVGALDVSMQHAPFMAAAELDEDMRHEALDLRLHEVQPRC 99
>08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,
4521632-4521723,4522226-4522342,4522641-4522704,
4523175-4523228,4523579-4523666,4523788-4524023,
4525258-4525478,4525634-4525827,4525938-4525995,
4526771-4526824,4526851-4527473,4527580-4527640,
4528417-4528590,4528803-4529063,4529201-4529320,
4529388-4530022,4530062-4530828,4530915-4531012,
4531101-4531155,4531230-4531318
Length = 2010
Score = 27.9 bits (59), Expect = 2.9
Identities = 21/77 (27%), Positives = 35/77 (45%)
Frame = +2
Query: 143 SKEMQYNFSDQKKFSTWRKLWIYLAKAEKELGLDITDEQIAELESAIHDIDFDXASEHEK 322
S ++ NFS +K + R L+ L +E L E+I L +H S+ K
Sbjct: 1271 SVKIAINFSQKKVQGSARHLFQRLQGPFEEETLKAHFEKIIFLGQKLHPNRRKGESQELK 1330
Query: 323 RVRHDVMAHVHTLAQRC 373
++ +H+H L+Q C
Sbjct: 1331 QINPLHSSHLHALSQAC 1347
>03_02_0991 -
13034540-13034830,13035057-13035202,13035203-13035305,
13037980-13038115,13038221-13038439,13038574-13038949,
13040854-13041027,13041065-13041101
Length = 493
Score = 27.5 bits (58), Expect = 3.8
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 227 KELGLD-ITDEQIAELESAIHDIDFDXASEHEKRVR 331
+ LG+D + +E+IA + IH +FD S H+ +R
Sbjct: 22 QRLGIDHLFEEEIATTLNTIHGAEFDSPSLHDVALR 57
>06_03_0541 -
21944696-21944851,21944939-21945142,21945438-21947472,
21947644-21947720,21948289-21948477,21949188-21949448,
21949527-21949632,21951330-21951517,21951814-21951971,
21952015-21952840,21952947-21953210
Length = 1487
Score = 27.1 bits (57), Expect = 5.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 167 SDQKKFSTWRKLWIYLAKAEKELGLDI 247
+D KF+ W+ +W Y E EL L +
Sbjct: 452 NDDDKFNDWQAVWAYAIGPEPELVLSL 478
>01_01_0062 +
497728-497922,499444-499481,499576-499598,501156-501262,
501356-501407,501475-501559,501910-502000,502251-502289,
502383-502455,503285-503344,503439-503512,503606-503698,
503779-503880,504048-504128,504352-504426,504486-504614,
504705-504809
Length = 473
Score = 26.6 bits (56), Expect = 6.6
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = +2
Query: 227 KELGLDITDEQIAELESAIHDI---DFDXASEHE 319
+ELG+D D Q +L +HDI F EHE
Sbjct: 123 EELGIDRVDMQTVKLAGLLHDIGHGPFSHLFEHE 156
>04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931
Length = 246
Score = 26.2 bits (55), Expect = 8.7
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -2
Query: 370 TLGKRVHVRHDVMSYTLLVL*RXIEIY--VVDRRLQLGDL 257
TLG R+H RH ++ ++ +Y VDRR GD+
Sbjct: 122 TLGHRIHERHALLLEVVMTFGLVYTVYATAVDRRSGGGDI 161
>03_05_1065 + 30061588-30061883,30061995-30062056,30062196-30062276,
30062391-30062464,30062547-30062629,30063044-30063147,
30063526-30063665,30063736-30063783,30063939-30063991,
30064178-30064262,30064346-30064412,30064496-30064606,
30065262-30065283,30066244-30071110,30071186-30071374,
30071463-30071577,30072329-30073388,30074247-30074694,
30074966-30075019,30075105-30076898,30076989-30077949,
30078271-30078384,30078459-30078613,30078934-30079026,
30079341-30079613,30093423-30093975,30094465-30094540,
30094619-30094718
Length = 4025
Score = 26.2 bits (55), Expect = 8.7
Identities = 20/77 (25%), Positives = 36/77 (46%)
Frame = +2
Query: 98 SEFCNYRSPLSTRYASKEMQYNFSDQKKFSTWRKLWIYLAKAEKELGLDITDEQIAELES 277
S FC + LST+ K++ SD +K++ YL K ++L L D +I +L
Sbjct: 2289 SSFCKEVTVLSTKTRPKKLVLQGSDGQKYT-------YLLKGREDLRL---DSRIMQLLE 2338
Query: 278 AIHDIDFDXASEHEKRV 328
AI+ + + + +
Sbjct: 2339 AINSFFYSSSDTRSRNM 2355
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,012,223
Number of Sequences: 37544
Number of extensions: 151718
Number of successful extensions: 410
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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