Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_D18
         (380 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71266-5|CAD56593.1|  370|Caenorhabditis elegans Hypothetical pr...    77   4e-15
Z71266-4|CAA95843.1|  478|Caenorhabditis elegans Hypothetical pr...    77   4e-15
AF040661-7|AAG24223.1|  439|Caenorhabditis elegans Hypothetical ...    27   3.4  

>Z71266-5|CAD56593.1|  370|Caenorhabditis elegans Hypothetical
           protein R06C7.5b protein.
          Length = 370

 Score = 77.0 bits (181), Expect = 4e-15
 Identities = 38/91 (41%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
 Frame = +2

Query: 113 YRSPLSTRYASKEMQYNF-SDQKKFSTWRKLWIYLAKAEKELGL-DITDEQIAELESAIH 286
           + S LSTRY       +  S+  K + WR+LWI+LA+AEKELGL  +T + I E++S   
Sbjct: 7   FESVLSTRYCKNSPLVSILSETNKATLWRQLWIWLAEAEKELGLKQVTQDAIDEMKSNRD 66

Query: 287 DIDFDXASEHEKRVRHDVMAHVHTLAQRCPT 379
             D+      E++++HDVMAH H   + CPT
Sbjct: 67  VFDWPFIRSEERKLKHDVMAHNHAFGKLCPT 97


>Z71266-4|CAA95843.1|  478|Caenorhabditis elegans Hypothetical
           protein R06C7.5a protein.
          Length = 478

 Score = 77.0 bits (181), Expect = 4e-15
 Identities = 38/91 (41%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
 Frame = +2

Query: 113 YRSPLSTRYASKEMQYNF-SDQKKFSTWRKLWIYLAKAEKELGL-DITDEQIAELESAIH 286
           + S LSTRY       +  S+  K + WR+LWI+LA+AEKELGL  +T + I E++S   
Sbjct: 7   FESVLSTRYCKNSPLVSILSETNKATLWRQLWIWLAEAEKELGLKQVTQDAIDEMKSNRD 66

Query: 287 DIDFDXASEHEKRVRHDVMAHVHTLAQRCPT 379
             D+      E++++HDVMAH H   + CPT
Sbjct: 67  VFDWPFIRSEERKLKHDVMAHNHAFGKLCPT 97


>AF040661-7|AAG24223.1|  439|Caenorhabditis elegans Hypothetical
           protein W10G11.17 protein.
          Length = 439

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +2

Query: 152 MQYNFS--DQKKFSTWRKLWIYLAKAEKELGLDITDEQIAELESAIHDID 295
           M YN S  D ++ +TW+K W   A+ EK    +++     + E  + +ID
Sbjct: 1   MDYNLSTDDFEECATWQKYWNLTAELEKNKDRNLSSSG-NDTEDVVSEID 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,135,401
Number of Sequences: 27780
Number of extensions: 146927
Number of successful extensions: 366
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)