Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_D12
(680 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0659 + 27008867-27008963,27011209-27011280,27011833-270119... 32 0.48
04_01_0203 + 2432745-2433642,2433723-2433806,2434458-2434471 31 1.1
11_06_0685 - 26272928-26273110,26273186-26273257,26273339-262734... 29 2.6
11_06_0459 + 23830204-23830350,23830419-23830592,23830738-238308... 29 2.6
11_06_0276 - 21826458-21826640,21826716-21826787,21826869-218269... 29 2.6
05_01_0088 + 581619-581854,581890-582035,583143-583263,583593-58... 29 2.6
03_06_0253 - 32666152-32666360,32666443-32666632,32666764-326668... 29 4.5
02_02_0468 + 10633992-10634064,10635998-10636130,10636244-106363... 28 6.0
07_03_0860 + 22057309-22058453,22059833-22059964,22060328-220604... 28 7.9
>04_04_0659 +
27008867-27008963,27011209-27011280,27011833-27011907,
27012071-27012181,27012609-27012713,27012997-27013049,
27013549-27013674,27013742-27013861
Length = 252
Score = 31.9 bits (69), Expect = 0.48
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = +1
Query: 115 KEDPKKAEPLRTVKVSILQDDKEKANIKPNFSIQVKFTTDNKASKSPVKHGIVDSKKHLI 294
K D KK EPL+ +QD+K ++ +I K + K+ + V G +K +
Sbjct: 69 KLDTKKKEPLQMKSHEEVQDEKRRSQESDKSNIMAKHIKETKSQTTEVVPGADRTKAEVT 128
Query: 295 TNEQ 306
N Q
Sbjct: 129 RNSQ 132
>04_01_0203 + 2432745-2433642,2433723-2433806,2434458-2434471
Length = 331
Score = 30.7 bits (66), Expect = 1.1
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 1/108 (0%)
Frame = +1
Query: 7 SSTALKHSKSNGHAIPTNTHSKIMNVTKSQKEYDPSKEDPKKAEPLRTVKVSILQDDKEK 186
SS A++H +SN + ++ + K + + + + +P V++ D K
Sbjct: 147 SSVAVQHDQSNKPDLSSSVAVQHDQTNKPEWPSSVAVQHDQTNKPELPSSVAVQHDQTNK 206
Query: 187 ANIKPNFSIQVKFTTDNKASKSPVKHG-IVDSKKHLITNEQDNNNKTE 327
+ + ++Q T + S + G IV K TNEQ N K E
Sbjct: 207 PELPSSVAVQHDQTNKPELPSSVAESGGIVSPKSPEKTNEQIVNKKNE 254
>11_06_0685 -
26272928-26273110,26273186-26273257,26273339-26273425,
26273566-26273655,26273741-26273785,26273872-26274054,
26274333-26274392,26274521-26274703,26274779-26274907,
26275083-26275380,26275454-26275608,26275791-26275929,
26276015-26276096,26276167-26276285,26276367-26276494,
26276640-26276813,26276882-26277028
Length = 757
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
Frame = +1
Query: 169 QDDKEKANIKPNFSIQVKFTTDNKASKSPVKHGIVDSKKHLITNEQDNNN--KTE-EKML 339
+D K PN +++ + D + + K+ +++ + NN KT+ E+
Sbjct: 389 EDYKVNYTFTPNEKLEMNYVNDKAEEFGQHNFQVKEEPKNESSDDYEMNNHRKTKKERSN 448
Query: 340 XXXXXXXXXXXXIMNKDAEDNYKQITVCNKRYKSFDDY 453
I + D + N K IT+ + +S DDY
Sbjct: 449 MRSTKRSNKEPYITDSDGKTNEKAITIDDDSEESLDDY 486
>11_06_0459 +
23830204-23830350,23830419-23830592,23830738-23830865,
23830947-23831065,23831136-23831217,23831303-23831441,
23831624-23831778,23831852-23832149,23832325-23832453,
23832529-23832711,23832840-23832899,23832973-23833101,
23833177-23833359,23833446-23833490,23833576-23833665,
23833806-23833892,23833974-23834045,23834120-23834302
Length = 800
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
Frame = +1
Query: 169 QDDKEKANIKPNFSIQVKFTTDNKASKSPVKHGIVDSKKHLITNEQDNNN--KTE-EKML 339
+D K PN +++ + D + + K+ +++ + NN KT+ E+
Sbjct: 389 EDYKVNYTFTPNEKLEMNYVNDKAEEFGQHNFQVKEEPKNESSDDYEMNNHRKTKKERSN 448
Query: 340 XXXXXXXXXXXXIMNKDAEDNYKQITVCNKRYKSFDDY 453
I + D + N K IT+ + +S DDY
Sbjct: 449 MRSTKRSNKEPYITDSDGKTNEKAITIDDDSEESLDDY 486
>11_06_0276 -
21826458-21826640,21826716-21826787,21826869-21826955,
21827096-21827185,21827271-21827315,21827402-21827584,
21827660-21827788,21827862-21827921,21828050-21828232,
21828308-21828436,21828612-21828909,21828983-21829137,
21829320-21829458,21829544-21829625,21829696-21829814,
21829896-21830023,21830169-21830342,21830411-21830557
Length = 800
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
Frame = +1
Query: 169 QDDKEKANIKPNFSIQVKFTTDNKASKSPVKHGIVDSKKHLITNEQDNNN--KTE-EKML 339
+D K PN +++ + D + + K+ +++ + NN KT+ E+
Sbjct: 389 EDYKVNYTFTPNEKLEMNYVNDKAEEFGQHNFQVKEEPKNESSDDYEMNNHRKTKKERSN 448
Query: 340 XXXXXXXXXXXXIMNKDAEDNYKQITVCNKRYKSFDDY 453
I + D + N K IT+ + +S DDY
Sbjct: 449 MRSTKRSNKEPYITDSDGKTNEKAITIDDDSEESLDDY 486
>05_01_0088 +
581619-581854,581890-582035,583143-583263,583593-583773,
583842-584015,584161-584288,584370-584488,584559-584640,
584726-584864,585047-585201,585275-585572,585748-585876,
585952-586134,586263-586322,586396-586524,586600-586782,
586869-586913,586999-587088,587229-587315,587397-587468,
587813-587887
Length = 943
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
Frame = +1
Query: 169 QDDKEKANIKPNFSIQVKFTTDNKASKSPVKHGIVDSKKHLITNEQDNNN--KTE-EKML 339
+D K PN +++ + D + + K+ +++ + NN KT+ E+
Sbjct: 568 EDYKVNYTFTPNEKLEMNYVNDKAEEFGQHNFQVKEEPKNESSDDYEMNNHRKTKKERSN 627
Query: 340 XXXXXXXXXXXXIMNKDAEDNYKQITVCNKRYKSFDDY 453
I + D + N K IT+ + +S DDY
Sbjct: 628 MRSTKRSNKEPYITDSDGKTNEKAITIDDDSEESLDDY 665
>03_06_0253 -
32666152-32666360,32666443-32666632,32666764-32666862,
32666999-32667094,32667408-32668361,32668683-32668901,
32669282-32669491,32669617-32669879,32670041-32671717,
32672702-32672852
Length = 1355
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +1
Query: 172 DDKEKANIKPNFSIQVKFTTDNKASKSPVKHGIVDSKKHLITNEQD 309
D+ E AN+ PN S T + A+ SP KH VDS I + Q+
Sbjct: 542 DEPENANV-PNGSC-TNGTANGSANSSPEKHSNVDSSDLPIKSRQE 585
>02_02_0468 +
10633992-10634064,10635998-10636130,10636244-10636315,
10637028-10637171,10637271-10637342,10637451-10637516,
10637603-10637673,10637796-10637936,10638347-10638688,
10638989-10639383,10639481-10639795
Length = 607
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 618 IVGIIIIAELFLLCNSTSQSH 680
++G++I+A LFL C +SH
Sbjct: 228 VIGLLIVAALFLFCKGRRKSH 248
>07_03_0860 + 22057309-22058453,22059833-22059964,22060328-22060412,
22061666-22061867,22062273-22062344,22062509-22062573,
22062682-22062741,22063033-22064379,22064463-22064607,
22064688-22067442,22068540-22068630,22068655-22068873
Length = 2105
Score = 27.9 bits (59), Expect = 7.9
Identities = 24/85 (28%), Positives = 32/85 (37%)
Frame = +1
Query: 10 STALKHSKSNGHAIPTNTHSKIMNVTKSQKEYDPSKEDPKKAEPLRTVKVSILQDDKEKA 189
ST HS+ G P H + V P K D K +P V VS Q D E
Sbjct: 894 STTSGHSQVTGKPHPAGLHMEKSGVQTVTISAPPGKSDVNKLKPAEDV-VSHRQKDNEAV 952
Query: 190 NIKPNFSIQVKFTTDNKASKSPVKH 264
+ ++ ++KAS KH
Sbjct: 953 S-----GVRKSGENESKASPITEKH 972
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,373,760
Number of Sequences: 37544
Number of extensions: 183796
Number of successful extensions: 546
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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