Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_D11
(486 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac... 189 2e-49
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch... 189 2e-49
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17... 32 0.040
SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2... 27 1.1
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 27 2.0
SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|ch... 26 3.5
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s... 25 6.1
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom... 25 6.1
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 25 8.0
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb... 25 8.0
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 25 8.0
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ... 25 8.0
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 25 8.0
>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 189 bits (461), Expect = 2e-49
Identities = 86/139 (61%), Positives = 109/139 (78%)
Frame = +1
Query: 31 LSSNMADQTEKAFQKQATVFLNRKGGMKRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPF 210
+++ + Q+E+AFQKQ +F N K G R R K+VGLGFKTP EA+ G Y+DKKCPF
Sbjct: 1 MATELVVQSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPF 57
Query: 211 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEI 390
G VSIRGRILTG V KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR +
Sbjct: 58 VGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INE 116
Query: 391 GDIVTIGECRPLSKTVRFN 447
GD+VT+G+CRPLSKTVRFN
Sbjct: 117 GDVVTVGQCRPLSKTVRFN 135
>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 189 bits (461), Expect = 2e-49
Identities = 86/139 (61%), Positives = 109/139 (78%)
Frame = +1
Query: 31 LSSNMADQTEKAFQKQATVFLNRKGGMKRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPF 210
+++ + Q+E+AFQKQ +F N K G R R K+VGLGFKTP EA+ G Y+DKKCPF
Sbjct: 1 MATELVVQSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPF 57
Query: 211 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEI 390
G VSIRGRILTG V KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR +
Sbjct: 58 VGQVSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INE 116
Query: 391 GDIVTIGECRPLSKTVRFN 447
GD+VT+G+CRPLSKTVRFN
Sbjct: 117 GDVVTVGQCRPLSKTVRFN 135
>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 90
Score = 32.3 bits (70), Expect = 0.040
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +1
Query: 247 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPL 426
G+V M +T +R + P ++ +++N V + +GD VTI CRP
Sbjct: 7 GIVISRAMPKTAKVRVAKEKFHPVVKKYVTQYQNYMVQDD---LNCNVGDAVTIQPCRPR 63
Query: 427 SKTVRF 444
S T RF
Sbjct: 64 SATKRF 69
>SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 304
Score = 27.5 bits (58), Expect = 1.1
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +1
Query: 7 TCNPTFFSLSSNMADQTEKAFQKQATVFLNRKGGMKRKDMRHSKNVGLGFKTPREAVE 180
T N FS SS+ + + K K LN+ ++K+ + S + G K PR AVE
Sbjct: 233 TRNTPTFSFSSSSSQTSLKHKPKNVFAELNKS---RKKNNKDSLDQGQNVKRPRSAVE 287
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 26.6 bits (56), Expect = 2.0
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -1
Query: 399 DVSDFHVPEARR*MNRHVPVSL 334
DV+ + VPEARR RH PV L
Sbjct: 481 DVNYYPVPEARRSNMRHRPVGL 502
>SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 25.8 bits (54), Expect = 3.5
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +1
Query: 67 FQKQATVFLNRKGGMKRKDMRHSKNVGLGFKTPREAVEG-TYIDKKCPFTGNVSIRGRIL 243
+ K T F N+ G K M K G+ A G T+ID P I G+I+
Sbjct: 163 YHKHVTAF-NKAGEEKMGVMDELKKRGMKSLNEIFAEAGATFIDPPNPNVNFTQIDGKIV 221
Query: 244 TGV 252
TGV
Sbjct: 222 TGV 224
>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 279
Score = 25.0 bits (52), Expect = 6.1
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1
Query: 147 TNILRMSHILPFHAPLAIEEH 85
TN+L+M LP H I EH
Sbjct: 16 TNVLKMKKPLPLHMRTKIREH 36
>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 25.0 bits (52), Expect = 6.1
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +1
Query: 97 RKGGMKRKDMRHSKNVGLGFKTPRE 171
R G D++ ++N+G+ F+TP +
Sbjct: 194 RPGDHNSTDLKFAENIGIKFETPEQ 218
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 24.6 bits (51), Expect = 8.0
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Frame = -1
Query: 486 DFFGTFAFRDLQYIEPDCLGKRPALAN-CDDV--SDFHVPEARR*MNRHVPVSLLKSVVF 316
DFF +R + +E + ++ D+ +D + E R ++ +P LLKS+V
Sbjct: 479 DFFQHALYRGIDALENVDINLETSIKTYISDIYFADLSLDEIREELDARLP--LLKSIVE 536
Query: 315 RQVMEIIAPDNNCSLH 268
R ++ +NN S+H
Sbjct: 537 RYLISKKNDNNNESIH 552
>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 293
Score = 24.6 bits (51), Expect = 8.0
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = -1
Query: 384 HVPEARR*MNRHVPVSLLKSVVFRQVMEII 295
H PE NR ++++K+V+F+Q+ E++
Sbjct: 49 HPPEEIARRNRVPQMAVVKAVLFQQLCEVV 78
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 24.6 bits (51), Expect = 8.0
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -2
Query: 194 SMYVPSTASRGVLKPRPTFLECLISFLFMPPLRLRNTVAC 75
S++ S+ S +++ T ++CL +F + L N AC
Sbjct: 658 SIFSESSLSSPIIEEPKTLIDCLKNFTHVEELSGENMFAC 697
>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 879
Score = 24.6 bits (51), Expect = 8.0
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
Frame = -1
Query: 354 RHVPVSLLKSVVFRQVMEIIAPDNNCSLHF-------HFLNNACQDTASDG 223
+HV + L FR I DN +LHF H ++ QDT SDG
Sbjct: 699 KHVDFTYLDDEKFRAT---IHDDNTFTLHFFNRHSPFHLISQFLQDTFSDG 746
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 24.6 bits (51), Expect = 8.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 446 LNLTVLESGLHSPIVTMSPISTSLKQGDR*TDMFLCRFSN 327
L+ + + L SP+ T++ + L G D+FL FSN
Sbjct: 6 LHESAIPKELDSPVTTIALYNNHLYFGTEGGDVFLYNFSN 45
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,133,028
Number of Sequences: 5004
Number of extensions: 44962
Number of successful extensions: 147
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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