Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_D11
         (486 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06617-1|CAA29834.1|  158|Homo sapiens protein ( Human mRNA for ...   234   1e-61
BC100025-1|AAI00026.1|  158|Homo sapiens RPS11 protein protein.       234   1e-61
BC070224-1|AAH70224.1|  158|Homo sapiens ribosomal protein S11 p...   234   1e-61
BC016378-1|AAH16378.1|  158|Homo sapiens ribosomal protein S11 p...   234   1e-61
BC010028-1|AAH10028.1|  158|Homo sapiens ribosomal protein S11 p...   234   1e-61
BC007945-1|AAH07945.1|  158|Homo sapiens RPS11 protein protein.       234   1e-61
BC007603-1|AAH07603.1|  158|Homo sapiens ribosomal protein S11 p...   234   1e-61
BC007283-1|AAH07283.1|  158|Homo sapiens ribosomal protein S11 p...   234   1e-61
AB028893-2|BAA88215.1|  158|Homo sapiens ribosomal protein S11 p...   234   1e-61
AB007152-1|BAA25818.1|   83|Homo sapiens ribosomal protein S11 p...   135   7e-32
U52144-1|AAC50455.1|  419|Homo sapiens isocitrate dehydrogenase ...    42   0.001
BC098386-1|AAH98386.1|  336|Homo sapiens vacuolar protein sortin...    29   8.7  
BC014128-1|AAH14128.1|  336|Homo sapiens vacuolar protein sortin...    29   8.7  
BC009747-1|AAH09747.1|  336|Homo sapiens vacuolar protein sortin...    29   8.7  

>X06617-1|CAA29834.1|  158|Homo sapiens protein ( Human mRNA for
           ribosomal protein S11. ).
          Length = 158

 Score =  234 bits (573), Expect = 1e-61
 Identities = 111/141 (78%), Positives = 125/141 (88%), Gaps = 6/141 (4%)
 Frame = +1

Query: 43  MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKC 204
           MAD QTE+A+QKQ T+F N+K  +     K K  R+ KN+GLGFKTP+EA+EGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 205 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 384
           PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 385 EIGDIVTIGECRPLSKTVRFN 447
           +IGDIVT+GECRPLSKTVRFN
Sbjct: 121 QIGDIVTVGECRPLSKTVRFN 141


>BC100025-1|AAI00026.1|  158|Homo sapiens RPS11 protein protein.
          Length = 158

 Score =  234 bits (573), Expect = 1e-61
 Identities = 111/141 (78%), Positives = 125/141 (88%), Gaps = 6/141 (4%)
 Frame = +1

Query: 43  MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKC 204
           MAD QTE+A+QKQ T+F N+K  +     K K  R+ KN+GLGFKTP+EA+EGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 205 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 384
           PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 385 EIGDIVTIGECRPLSKTVRFN 447
           +IGDIVT+GECRPLSKTVRFN
Sbjct: 121 QIGDIVTVGECRPLSKTVRFN 141


>BC070224-1|AAH70224.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  234 bits (573), Expect = 1e-61
 Identities = 111/141 (78%), Positives = 125/141 (88%), Gaps = 6/141 (4%)
 Frame = +1

Query: 43  MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKC 204
           MAD QTE+A+QKQ T+F N+K  +     K K  R+ KN+GLGFKTP+EA+EGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 205 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 384
           PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 385 EIGDIVTIGECRPLSKTVRFN 447
           +IGDIVT+GECRPLSKTVRFN
Sbjct: 121 QIGDIVTVGECRPLSKTVRFN 141


>BC016378-1|AAH16378.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  234 bits (573), Expect = 1e-61
 Identities = 111/141 (78%), Positives = 125/141 (88%), Gaps = 6/141 (4%)
 Frame = +1

Query: 43  MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKC 204
           MAD QTE+A+QKQ T+F N+K  +     K K  R+ KN+GLGFKTP+EA+EGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 205 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 384
           PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 385 EIGDIVTIGECRPLSKTVRFN 447
           +IGDIVT+GECRPLSKTVRFN
Sbjct: 121 QIGDIVTVGECRPLSKTVRFN 141


>BC010028-1|AAH10028.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  234 bits (573), Expect = 1e-61
 Identities = 111/141 (78%), Positives = 125/141 (88%), Gaps = 6/141 (4%)
 Frame = +1

Query: 43  MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKC 204
           MAD QTE+A+QKQ T+F N+K  +     K K  R+ KN+GLGFKTP+EA+EGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 205 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 384
           PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 385 EIGDIVTIGECRPLSKTVRFN 447
           +IGDIVT+GECRPLSKTVRFN
Sbjct: 121 QIGDIVTVGECRPLSKTVRFN 141


>BC007945-1|AAH07945.1|  158|Homo sapiens RPS11 protein protein.
          Length = 158

 Score =  234 bits (573), Expect = 1e-61
 Identities = 111/141 (78%), Positives = 125/141 (88%), Gaps = 6/141 (4%)
 Frame = +1

Query: 43  MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKC 204
           MAD QTE+A+QKQ T+F N+K  +     K K  R+ KN+GLGFKTP+EA+EGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 205 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 384
           PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 385 EIGDIVTIGECRPLSKTVRFN 447
           +IGDIVT+GECRPLSKTVRFN
Sbjct: 121 QIGDIVTVGECRPLSKTVRFN 141


>BC007603-1|AAH07603.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  234 bits (573), Expect = 1e-61
 Identities = 111/141 (78%), Positives = 125/141 (88%), Gaps = 6/141 (4%)
 Frame = +1

Query: 43  MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKC 204
           MAD QTE+A+QKQ T+F N+K  +     K K  R+ KN+GLGFKTP+EA+EGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 205 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 384
           PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 385 EIGDIVTIGECRPLSKTVRFN 447
           +IGDIVT+GECRPLSKTVRFN
Sbjct: 121 QIGDIVTVGECRPLSKTVRFN 141


>BC007283-1|AAH07283.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  234 bits (573), Expect = 1e-61
 Identities = 111/141 (78%), Positives = 125/141 (88%), Gaps = 6/141 (4%)
 Frame = +1

Query: 43  MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKC 204
           MAD QTE+A+QKQ T+F N+K  +     K K  R+ KN+GLGFKTP+EA+EGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 205 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 384
           PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 385 EIGDIVTIGECRPLSKTVRFN 447
           +IGDIVT+GECRPLSKTVRFN
Sbjct: 121 QIGDIVTVGECRPLSKTVRFN 141


>AB028893-2|BAA88215.1|  158|Homo sapiens ribosomal protein S11
           protein.
          Length = 158

 Score =  234 bits (573), Expect = 1e-61
 Identities = 111/141 (78%), Positives = 125/141 (88%), Gaps = 6/141 (4%)
 Frame = +1

Query: 43  MAD-QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKC 204
           MAD QTE+A+QKQ T+F N+K  +     K K  R+ KN+GLGFKTP+EA+EGTYIDKKC
Sbjct: 1   MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC 60

Query: 205 PFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV 384
           PFTGNVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV
Sbjct: 61  PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV 120

Query: 385 EIGDIVTIGECRPLSKTVRFN 447
           +IGDIVT+GECRPLSKTVRFN
Sbjct: 121 QIGDIVTVGECRPLSKTVRFN 141


>AB007152-1|BAA25818.1|   83|Homo sapiens ribosomal protein S11
           protein.
          Length = 83

 Score =  135 bits (327), Expect = 7e-32
 Identities = 60/66 (90%), Positives = 64/66 (96%)
 Frame = +1

Query: 250 VVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLS 429
           VV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+IGDIVT+GECRPLS
Sbjct: 1   VVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLS 60

Query: 430 KTVRFN 447
           KTVRFN
Sbjct: 61  KTVRFN 66


>U52144-1|AAC50455.1|  419|Homo sapiens isocitrate dehydrogenase
           protein.
          Length = 419

 Score = 41.9 bits (94), Expect = 0.001
 Identities = 16/27 (59%), Positives = 22/27 (81%)
 Frame = -1

Query: 459 DLQYIEPDCLGKRPALANCDDVSDFHV 379
           DL+++E  CL +RPALA+CDDV+D  V
Sbjct: 18  DLEHVEAHCLAQRPALAHCDDVTDLDV 44


>BC098386-1|AAH98386.1|  336|Homo sapiens vacuolar protein sorting
           26 homolog B (S. pombe) protein.
          Length = 336

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 25  FSLSSNMADQTEKAFQKQATVFLNRKGGMKRKDMRH 132
           + L+  + D+ E+ + KQ  V L RKG + RK M H
Sbjct: 270 YYLNLVLIDEEERRYFKQQEVVLWRKGDIVRKSMSH 305


>BC014128-1|AAH14128.1|  336|Homo sapiens vacuolar protein sorting
           26 homolog B (S. pombe) protein.
          Length = 336

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 25  FSLSSNMADQTEKAFQKQATVFLNRKGGMKRKDMRH 132
           + L+  + D+ E+ + KQ  V L RKG + RK M H
Sbjct: 270 YYLNLVLIDEEERRYFKQQEVVLWRKGDIVRKSMSH 305


>BC009747-1|AAH09747.1|  336|Homo sapiens vacuolar protein sorting
           26 homolog B (S. pombe) protein.
          Length = 336

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 25  FSLSSNMADQTEKAFQKQATVFLNRKGGMKRKDMRH 132
           + L+  + D+ E+ + KQ  V L RKG + RK M H
Sbjct: 270 YYLNLVLIDEEERRYFKQQEVVLWRKGDIVRKSMSH 305


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,268,541
Number of Sequences: 237096
Number of extensions: 1705960
Number of successful extensions: 7383
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7374
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4384610846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)