Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_D09
         (357 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo...    25   3.5  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    25   3.5  
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    24   6.1  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    24   8.0  
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    24   8.0  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    24   8.0  
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ...    24   8.0  

>SPBC1711.13 |his2||histidinol dehydrogenase His2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 11/37 (29%), Positives = 24/37 (64%)
 Frame = +2

Query: 182 SVHPDLFGKYPEQRSINEHSLQQLSAFIEAQQSRKSI 292
           S+ P++F +   Q++IN+H+L+   ++I     +KS+
Sbjct: 281 SLSPEMFDRI--QKAINDHALRLSRSYIIKHAIKKSV 315


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -3

Query: 349 KAPSGISFGLRLKGKWSVGYTFSRLLSFYKS 257
           K P+ I  G   KG +SV   F RLL   KS
Sbjct: 284 KTPTCIQCGADTKGLFSVDKNFDRLLKNRKS 314


>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = +2

Query: 17  QRILFYFVKRSISFRIQFI*KMYSRIKIRCDCARGVICRFLSSAEISTAL 166
           +++ F F+K    F    I ++ S+ ++  D  R   C++ SSA +S+ +
Sbjct: 97  KKVFFKFLKTCAIFYQTCISELISKFQL--DSYRPFFCKWTSSATVSSTI 144


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
 Frame = +2

Query: 140 SSAEISTALRPFYFSVHPD------LFGKYPEQRSINEHSLQQLSAFIEAQQSRKSIAHT 301
           SSA+   +LR FY S+ PD       F  +  + S N     Q S F      R ++  T
Sbjct: 231 SSAQQLISLRDFYVSIKPDNPLTGSFFNLFSLRSSSNNPDSDQESQFSRLPDERATMFFT 290


>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +2

Query: 155 STALRPFYFSVHPDLFGKYPEQRSINEHSLQQLSAFIEAQQSRKSIA 295
           S A+   Y +  P    K  E  S N H ++ + +FI+   S ++ A
Sbjct: 256 SHAVLQIYITQTPKSGEKQEESESQNSHKVRSVFSFIDLAGSERASA 302


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 150 KYLLR*DRSTSAYIQIS 200
           KYL+R DR+  AYI +S
Sbjct: 441 KYLIRMDRNEEAYIVLS 457


>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
           Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 112 AVASYFYSAIHFLDELDAEGNRTF 41
           A+A     AI F+DELDA G + F
Sbjct: 272 ALAKEKSPAIIFIDELDAIGTKRF 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,446,057
Number of Sequences: 5004
Number of extensions: 25153
Number of successful extensions: 69
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)