Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_D09
         (357 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0530 + 18568034-18568160,18568716-18569011,18569380-185694...    27   4.3  
06_03_1507 - 30646168-30646254,30646350-30646490,30648109-306482...    27   4.3  
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865...    27   4.3  
12_01_1109 - 11726818-11727719,11728225-11728394,11730407-117304...    27   5.7  
07_03_0319 - 16745161-16745205,16745304-16745370,16745593-16745741     27   5.7  
04_03_0938 + 20933008-20933288,20933408-20933473,20933568-20934099     26   7.6  

>10_08_0530 +
           18568034-18568160,18568716-18569011,18569380-18569475,
           18570107-18570166,18570711-18570956
          Length = 274

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 76  LDELDAEGNRTFHKIEKYSLDNY 8
           LDE   E +RTFH  E+Y  D+Y
Sbjct: 102 LDEKLDEASRTFHVTEEYEDDDY 124


>06_03_1507 -
           30646168-30646254,30646350-30646490,30648109-30648202,
           30648445-30648509,30648934-30649176,30649442-30649499,
           30649957-30650037,30650323-30650533,30650975-30651141,
           30651216-30651268,30651600-30651681,30651765-30651914,
           30652027-30652111,30652189-30652393,30652502-30652573,
           30652911-30653456
          Length = 779

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 119 GVICRFLSSAEISTALRPFYFSVHPDLFGKYP 214
           G++C   SS +  T + P+YF VH     K+P
Sbjct: 194 GILCS-CSSCKGRTVVSPYYFEVHAGSTKKHP 224


>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
            30286718-30287042,30287563-30287818,30287901-30288117,
            30288743-30289095,30289330-30289833,30291267-30292467,
            30292614-30292970,30293258-30293495,30294083-30295125,
            30295234-30296649,30296731-30296855,30297036-30297314,
            30297352-30297382,30298957-30299022,30299447-30299689,
            30299848-30299898,30299980-30300071,30300182-30300249,
            30300515-30300600,30300720-30300824,30300994-30301127,
            30302403-30302436,30302620-30302892,30303019-30303288,
            30303384-30303974,30304065-30304214
          Length = 3376

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -3

Query: 316  LKGKWSVGYTFSRLLSFYKSAELLK*MFIDTSLFWIFSKEI-WMYAEVERS*RSRYFC 146
            L+ KW V Y + +  +  +S+E +   F D +  ++   E+  +Y  + R+ +  + C
Sbjct: 1506 LRNKWRVVYDYMKGKNVIESSEEMSHSFFDKNKHYLLCSELKQLYVAITRTRQRLWIC 1563


>12_01_1109 -
           11726818-11727719,11728225-11728394,11730407-11730483,
           11730559-11730645,11730730-11730816,11731887-11731991,
           11732133-11732168,11733636-11733754,11733862-11734067,
           11735854-11735906,11735986-11736153,11736507-11736591,
           11737845-11738023,11738939-11739070,11739209-11739295,
           11739920-11739972,11740820-11740892,11741791-11742442,
           11743165-11743229
          Length = 1111

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 218 QRSINEHSLQQLSAFIEAQQSRKSIAH 298
           + S+NE  L+ LS+F+E ++S   + H
Sbjct: 423 KESLNESGLEVLSSFVETKRSLDQVDH 449


>07_03_0319 - 16745161-16745205,16745304-16745370,16745593-16745741
          Length = 86

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 325 GLRLKGKWSVGYTFSR 278
           GL+LK KW  GY F+R
Sbjct: 68  GLKLKVKWEPGYPFTR 83


>04_03_0938 + 20933008-20933288,20933408-20933473,20933568-20934099
          Length = 292

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +2

Query: 86  SRIKIRCDCARGVICRFLSSAEISTALRPFY--FSVHPDLFGKYPEQRSINEHSLQ 247
           SR+ + CD     + R+L  AE +++ R      +V+P   G   E R    H L+
Sbjct: 179 SRVLVGCDGVHSAVARWLGMAEPASSGRSCVRGLAVYPGGHGVRKELRQFLSHGLR 234


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,497,745
Number of Sequences: 37544
Number of extensions: 135861
Number of successful extensions: 306
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)