Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_D08
(566 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 30 0.21
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo... 29 0.48
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.5
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 26 4.4
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 26 4.4
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 5.9
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 25 7.7
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc... 25 7.7
SPBC887.06c |snx3|grd19|sorting nexin Snx3|Schizosaccharomyces p... 25 7.7
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 25 7.7
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 30.3 bits (65), Expect = 0.21
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 134 IENYGEEPFCVCNAGYTGNGQSCYQTNEYVCASCSPYASCPYSE 265
++ +GE+ C+ GY G G+ + N ++C Y +SE
Sbjct: 480 LQGFGEDLDCLILGGYFGRGKQSGKINSFLCGLRMDYTPKDHSE 523
>SPAC3C7.07c |||arginine-tRNA protein transferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 29.1 bits (62), Expect = 0.48
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 428 PGYINYRDERNNELCRIYSYDTPTEPTENND 520
P YI++ DE N+++ YD+ + ++N D
Sbjct: 260 PKYISFGDENNSDIQTAVDYDSSEDSSQNED 290
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 26.6 bits (56), Expect = 2.5
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +2
Query: 239 PYASCPYSEIANAYSCRCNTGYSGNGFICVENPAETTTTS 358
PY + + I NA + G +G F C+ N + T ++
Sbjct: 195 PYTTISHYNITNATNGTYCNGTNGTNFTCIVNASNATNST 234
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 4.4
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +2
Query: 452 ERNNELC---RIYSYDTPTEPTENNDPSIVCTSDTDCPPN 562
E NN L + +Y TP PTE+ P + +S T P+
Sbjct: 395 EANNFLAPTSNVPAYSTPARPTESPPPPPISSSSTTPRPD 434
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.8 bits (54), Expect = 4.4
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +2
Query: 464 ELCRIYSYDTPTEPTENNDPSIVCTSDTDCPPNA 565
ELCR Y P P E P T D PP A
Sbjct: 545 ELCRRYELQNPPCPLEIMGPEYDQTRDGYYPPGA 578
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 25.4 bits (53), Expect = 5.9
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 221 VCASCSPYASCPYSEIANAYSCRCNTGYSGNG 316
V A SP+ Y E+ Y C+ G+ G+G
Sbjct: 810 VLARMSPFDKATYVELCQKYGCK--VGFCGDG 839
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 25.0 bits (52), Expect = 7.7
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Frame = +2
Query: 62 KGNGVSCTKISGCENKNCDINAQCIENYGEEPFCVCNAGYTGNGQSCYQTNEYVCASCSP 241
K + V+C+ + E D+ + N P + + + Q Y T + + C
Sbjct: 117 KSSCVTCSTVLPLEFSVPDVQPRLYTNSSTNPDVLYMSSQHPHTQQRYSTLKRLMVRC-- 174
Query: 242 YASCPYSEIANAYSCRCNTGYSG---NGFI 322
SC YS ++ A N + G NG++
Sbjct: 175 -LSCEYSTLSEASDSMSNPLFFGDQDNGYV 203
>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 713
Score = 25.0 bits (52), Expect = 7.7
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = -2
Query: 175 SITYAERFLSIVLNTLSIDVTVFVFTTRYFCTAYTVSFKSFFASALEA 32
SI Y E F+S VL + F TR+F + + + L A
Sbjct: 402 SIAYYENFISRVLELFDVKTISFDPLTRHFAHRLSAELGNLMSQILAA 449
>SPBC887.06c |snx3|grd19|sorting nexin Snx3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 25.0 bits (52), Expect = 7.7
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +2
Query: 164 VCNAGYTGNGQSCYQTNEYVCASCSPYASCPYSEIANAYS 283
V N G G++ + T E VC + PY S + YS
Sbjct: 29 VINPQTHGIGRNMFTTYEIVCRTNMPYFRLHNSSVRRRYS 68
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 25.0 bits (52), Expect = 7.7
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +3
Query: 441 IIETRETMNFVES--IAMTLQPNLLKITI 521
I E + MN + I+ LQPNLL++TI
Sbjct: 1271 IYELIDRMNLIHKLLISSALQPNLLELTI 1299
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,473,161
Number of Sequences: 5004
Number of extensions: 56598
Number of successful extensions: 158
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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