Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_D07
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.06 |mad2||spindle checkpoint protein Mad2|Schizosaccha...    28   1.1  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   2.6  
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    27   3.5  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    26   4.6  
SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyce...    25   8.0  

>SPBC20F10.06 |mad2||spindle checkpoint protein
           Mad2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 203

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 3   GNEVDATKDDAQMSNVIIQREGTSAVITFSPDLEEQKRL-MHVYAEKSKESAT 158
           GN+ D  +   ++  +I Q    +A +TF P LEEQ    + VYA+K  E  T
Sbjct: 116 GNKEDELRVQKEIQALIRQ---ITATVTFLPQLEEQCTFNVLVYADKDSEVPT 165


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
 Frame = +3

Query: 306  FVLDTSGS---MSGRKMEQLKEAMYTILNELNPGDYFSIIDFESIITVHELSEADKEKTR 476
            F+L+TSG+    + + +  +K  +Y       P     I+D      ++ LS  DK+   
Sbjct: 1446 FILETSGTSQLFAHQILWNMKANLYKDEAATVPDSIKPILDRVMDKMINSLSGEDKQFYE 1505

Query: 477  YKYFYYNEIQPKLDLVAPYQATPENIEKAKI 569
             ++ ++NE+      + P+    +  +KAKI
Sbjct: 1506 REFTFFNEVTSISGKLKPFIRKSKPEKKAKI 1536


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = -3

Query: 229 PSFGRSTSYCTTN*PKTPSPAFSPVADSFDFSAYTC 122
           P F RST YCT       +P F    D  +   + C
Sbjct: 445 PRFARSTPYCTDIAKSMEAPIFHVNGDDVEAVTFIC 480


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 25/100 (25%), Positives = 47/100 (47%)
 Frame = +3

Query: 351 QLKEAMYTILNELNPGDYFSIIDFESIITVHELSEADKEKTRYKYFYYNEIQPKLDLVAP 530
           QL  +++ I N LN  D +  +D  S    H +   DKEK+++   YY     K++++  
Sbjct: 49  QLLRSIHIIQNLLNELDNY--VD-RSDCLFHSVWRTDKEKSKFSGNYYPFSPSKMNVITI 105

Query: 531 YQATPENIEKAKIIISRLESIGGTDINTALTVAVDLINKY 650
             +   +    + +IS+L   G     + L V ++  NK+
Sbjct: 106 DLSLRSSSTADEKLISQL---GEEAHESLLKVHIEKANKH 142


>SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +3

Query: 12  VDATKDDAQMSNVIIQREGTSAVITFSPDLEEQKRLMHVYAEKSKESATGENAGEGV 182
           V+ATK +  ++NV+       A+     D++  KRL  +  EK   S   E A E V
Sbjct: 108 VEATKGNPNIANVVYDEHYVYALTPGREDMKNVKRLAEI-GEKVDFSMPCEEAIEKV 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,981,470
Number of Sequences: 5004
Number of extensions: 63761
Number of successful extensions: 226
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)