Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_D06
         (549 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    28   0.79 
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    28   0.79 
SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p...    28   0.79 
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    27   1.8  
SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces...    25   5.6  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   7.3  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   9.7  

>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 541 SKNLYYVFEKKIHFQKSEITQNLMFFLGNEMFY 443
           +K L Y+F+K I     EI  + +F +GN +F+
Sbjct: 284 TKGLMYLFDKHIDATGYEIEASSLFVIGNFLFF 316


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 541 SKNLYYVFEKKIHFQKSEITQNLMFFLGNEMFY 443
           +K L Y+F+K I     EI  + +F +GN +F+
Sbjct: 274 TKGLMYLFDKHIDATGYEIEASSLFVIGNFLFF 306


>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = -3

Query: 349 LKCICYWFLIFFIIGFIPTIHSVLMYV*PYIKISAENLLYFIKLYTSKNYVSNN 188
           LKC+C +       G  P   SV+       ++  +N+L     Y ++N V NN
Sbjct: 302 LKCLCVYVESILRYGLPPDFSSVIFQPMAKSEVKIKNILLSKYAYLAQNPVGNN 355


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 541 SKNLYYVFEKKIHFQKSEITQNLMFFLGNEMFY 443
           +K L Y+F+K I     EI    +F +GN  F+
Sbjct: 228 TKGLMYLFDKHIDATGYEIEATSLFVIGNFFFF 260


>SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 333

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 538 KNLYYVFEKKIHFQKSEITQNLMFFLGNEMFY 443
           K L ++F+K I     EI  + +F +GN +F+
Sbjct: 251 KGLMHLFDKHIDGTGYEIEASSLFVIGNFLFF 282


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 368 SYFVIVTQMHLLLVFNIFYYWLYTYYS 288
           S+F +VT  + + V +   YW YT ++
Sbjct: 478 SWFHLVTNFNRIWVIHFTTYWYYTVFN 504


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 359  VIVTQMHLLLVFNIFYYWLYTYYSQCAYV 273
            + V   +L  +++IF +W   YYS   Y+
Sbjct: 1465 IFVNLNYLYSIWSIFVHWHRAYYSHLDYL 1493


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,191,067
Number of Sequences: 5004
Number of extensions: 41779
Number of successful extensions: 87
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)