Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_D06
         (549 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily ass...    32   0.24 
Z79755-9|CAC42297.1|  143|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z77656-3|CAB01140.1|  424|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AF326788-1|AAK38269.1|  424|Caenorhabditis elegans CLN-3.1 protein.    28   5.1  
Z35601-4|CAO82063.1|  145|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z35601-3|CAO82062.1|  185|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z35600-6|CAO82037.1|  145|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z35600-5|CAO82036.1|  185|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 177 protein.
          Length = 1667

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -3

Query: 331 WFLIFFIIGFIPTIHSVLMYV*P--YIKISAENLLYFIKLYTSKNYVSNNAYF 179
           WF +FF  GF   IHS+L Y  P  +   S       I    SK++ SN+  F
Sbjct: 586 WFSLFFACGFPFPIHSILKYFNPLFFPTTSVFRFTISISSIISKSFNSNSTLF 638


>Z79755-9|CAC42297.1|  143|Caenorhabditis elegans Hypothetical
           protein F43G9.13 protein.
          Length = 143

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -3

Query: 304 FIPTIHSVLMYV*PYIKISAENLLYFIKLYTSKNYVS 194
           FIP    ++M++ P++  +  +++  + +Y SKN VS
Sbjct: 80  FIPIPFIIMMFIIPFVFGAPTSMVLALAMYASKNAVS 116


>Z77656-3|CAB01140.1|  424|Caenorhabditis elegans Hypothetical
           protein F07B10.1 protein.
          Length = 424

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 420 ELFYFDIS*NISLPKKNIKFWVISLFWK*IFFSKT*YKFFE 542
           EL  F+ S  +SLP  +   W   L+   +F S++  KFFE
Sbjct: 281 ELIIFNCSQGLSLPLSSQYRWYQVLYQLGVFISRSSVKFFE 321


>AF326788-1|AAK38269.1|  424|Caenorhabditis elegans CLN-3.1 protein.
          Length = 424

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 420 ELFYFDIS*NISLPKKNIKFWVISLFWK*IFFSKT*YKFFE 542
           EL  F+ S  +SLP  +   W   L+   +F S++  KFFE
Sbjct: 281 ELIIFNCSQGLSLPLSSQYRWYQVLYQLGVFISRSSVKFFE 321


>Z35601-4|CAO82063.1|  145|Caenorhabditis elegans Hypothetical
           protein R10E9.3b protein.
          Length = 145

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = -2

Query: 386 KLITQTSYFVIVTQMHLLLVFNIFYYWLYTYYSQCAYVCVTL-H*NKCRKFVILHQIIYK 210
           K +T   Y V++    +LL  + FY  L    ++C  + +T+ H  K   +V+L  + ++
Sbjct: 48  KSVTFAIYLVLLIVSVILLDISFFYTILAFGIAECFLIAITIYHGIKPALYVVLLMLAFE 107

Query: 209 QKLRKQQCLF 180
             L   + +F
Sbjct: 108 MTLSLVKLVF 117


>Z35601-3|CAO82062.1|  185|Caenorhabditis elegans Hypothetical
           protein R10E9.3a protein.
          Length = 185

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = -2

Query: 386 KLITQTSYFVIVTQMHLLLVFNIFYYWLYTYYSQCAYVCVTL-H*NKCRKFVILHQIIYK 210
           K +T   Y V++    +LL  + FY  L    ++C  + +T+ H  K   +V+L  + ++
Sbjct: 48  KSVTFAIYLVLLIVSVILLDISFFYTILAFGIAECFLIAITIYHGIKPALYVVLLMLAFE 107

Query: 209 QKLRKQQCLF 180
             L   + +F
Sbjct: 108 MTLSLVKLVF 117


>Z35600-6|CAO82037.1|  145|Caenorhabditis elegans Hypothetical
           protein R10E9.3b protein.
          Length = 145

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = -2

Query: 386 KLITQTSYFVIVTQMHLLLVFNIFYYWLYTYYSQCAYVCVTL-H*NKCRKFVILHQIIYK 210
           K +T   Y V++    +LL  + FY  L    ++C  + +T+ H  K   +V+L  + ++
Sbjct: 48  KSVTFAIYLVLLIVSVILLDISFFYTILAFGIAECFLIAITIYHGIKPALYVVLLMLAFE 107

Query: 209 QKLRKQQCLF 180
             L   + +F
Sbjct: 108 MTLSLVKLVF 117


>Z35600-5|CAO82036.1|  185|Caenorhabditis elegans Hypothetical
           protein R10E9.3a protein.
          Length = 185

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = -2

Query: 386 KLITQTSYFVIVTQMHLLLVFNIFYYWLYTYYSQCAYVCVTL-H*NKCRKFVILHQIIYK 210
           K +T   Y V++    +LL  + FY  L    ++C  + +T+ H  K   +V+L  + ++
Sbjct: 48  KSVTFAIYLVLLIVSVILLDISFFYTILAFGIAECFLIAITIYHGIKPALYVVLLMLAFE 107

Query: 209 QKLRKQQCLF 180
             L   + +F
Sbjct: 108 MTLSLVKLVF 117


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,842,137
Number of Sequences: 27780
Number of extensions: 230665
Number of successful extensions: 464
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)