Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_D04
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    42   4e-06
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.5  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    23   3.3  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    22   5.8  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   5.8  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.7  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.7  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.7  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.7  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.7  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    21   7.7  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 42.3 bits (95), Expect = 4e-06
 Identities = 22/79 (27%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
 Frame = +1

Query: 196 GGTCGGSIISPTWILTAGHCTL--FTSGRYVLAG----TNNTNDDSGVMRSVKRLVIHPL 357
           G  CG +IIS  ++LTA HC +   T+   ++ G    ++ T  ++ V+ S+ +++IHP 
Sbjct: 185 GMICGATIISKRYVLTAAHCIIDENTTKLAIVVGEHDWSSKTETNATVLHSINKVIIHPK 244

Query: 358 FSVGPYWLDTDEFDIKQVA 414
           + +    ++ D++ I  +A
Sbjct: 245 YDI----IEKDDWQINDIA 259


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -3

Query: 336 FH*THNTTVVVCIVGAC*HIPAA--GEQCTVTSCEYP 232
           F  T+ T+VVV   G+C ++P    G  C +    +P
Sbjct: 83  FDGTYQTSVVVTHDGSCLYVPPGIFGSTCKIDIAWFP 119


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 187 LLFGGTCGGSIISPTWILTA-GHCTLFTSGRYVL 285
           +L G TC GS I   W+  A     +F+ G ++L
Sbjct: 575 VLAGATCLGSSIKAMWLRRALASLMVFSLGLFLL 608


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 219 DRPATGASEKQCVRESLMHCSRVRLLYDCFLFH 121
           D+ A    E +CV    ++CSR  L+   + +H
Sbjct: 27  DKHAERQEEYRCVICERVYCSRNSLMTHIYTYH 59


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 371 GPTLNSGWITSRFTERITPLSSFVLLVPANTYR 273
           GP ++      RF   I PL+ F   +P N YR
Sbjct: 133 GPWISIQEQIPRF-RHIGPLTPFPRFIPPNAYR 164


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 371 GPTLNSGWITSRFTERITPLSSFVLLVPANTYR 273
           GP ++      RF   I PL+ F   +P N YR
Sbjct: 374 GPWISIQEQIPRF-RHIGPLTPFPRFIPPNAYR 405


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 336 FH*THNTTVVVCIVGAC*HIP 274
           F  T+ T+VVV   G+C ++P
Sbjct: 83  FDGTYQTSVVVTHDGSCLYVP 103


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 336 FH*THNTTVVVCIVGAC*HIP 274
           F  T+ T+VVV   G+C ++P
Sbjct: 83  FDGTYQTSVVVTHDGSCLYVP 103


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 336 FH*THNTTVVVCIVGAC*HIP 274
           F  T+ T+VVV   G+C ++P
Sbjct: 83  FDGTYQTSVVVTHDGSCLYVP 103


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 336 FH*THNTTVVVCIVGAC*HIP 274
           F  T+ T+VVV   G+C ++P
Sbjct: 83  FDGTYQTSVVVTHDGSCLYVP 103


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 336 FH*THNTTVVVCIVGAC*HIP 274
           F  T+ T+VVV   G+C ++P
Sbjct: 83  FDGTYQTSVVVTHNGSCLYVP 103


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 371 GPTLNSGWITSRFTERITPLSSFVLLVPANTYR 273
           GP ++      RF   I P +SF   +P N YR
Sbjct: 363 GPWISIQEQIPRF-RHIGPSTSFPRFIPPNAYR 394


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,308
Number of Sequences: 438
Number of extensions: 3705
Number of successful extensions: 15
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)