Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_D02
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa...    30   0.26 
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    27   2.4  
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    27   2.4  
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom...    26   4.2  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   5.5  
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    26   5.5  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   5.5  
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60...    26   5.5  
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom...    26   5.5  
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    25   7.3  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    25   7.3  

>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
           Swd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 357

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +1

Query: 49  APSCEA--RITSPQVGPFSATSPLDGSNGSRQYRLSLFRYAS 168
           +P+C+    ++SP V  F AT  +  S   R+Y++SL+   S
Sbjct: 143 SPNCQGLLNVSSPVVAAFDATGLIFASVSERKYKISLYNIKS 184


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 231 SETTNTTLQNCTGGIAGYIDRMVLGPEHLYKG 326
           S+T  +TL   +G + G ++ ++ GP  +Y G
Sbjct: 336 SQTITSTLATASGTVPGTVEVILPGPSTIYSG 367


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 459 RARIMRWVFWSIVFGVTGGALCMFSKNGGP 548
           R +  R+ FW  + G+TGG L  + +  GP
Sbjct: 94  REKQARYAFWGFL-GLTGGGLLYYGRRYGP 122


>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 553 PLTRIYGPSPTVWSP 597
           PL +IYG   TVWSP
Sbjct: 210 PLQQIYGYGATVWSP 224


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -1

Query: 375 PQGRGEPRYRTRI*RC-HPCTSVLVPAPFGQCT 280
           P   G+P  +TR   C HPC  +  P P   CT
Sbjct: 275 PHSCGDPCGKTRGQDCEHPCPLLCHPGPCPPCT 307


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +3

Query: 222 RHMSETTNTTLQNCTGGIAGYIDRMVLGPEHLYKGGTFKSLYDTVVP 362
           +H +  TN+T+  C G IA Y+D  V  P  +      +SL D  VP
Sbjct: 431 QHPTLRTNSTI--CLGKIAEYLDASVRKP--VLAAALSRSLKDPFVP 473


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = -3

Query: 403 STPENMPRMPSGSWGTTVSYKDLKVPPLYKC---SGPSTIRSMYPAMPP 266
           + P  M   P  +  + ++Y+   V P Y     +  ST+ ++YP MPP
Sbjct: 436 AAPGTMYTTPLPTANSPIAYQSYSVMPTYWSFPQNYDSTVPAVYPYMPP 484


>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
           Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 582

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 407 DQHTGEYAQDALRVVGNHGIVQGFEGATL 321
           D H GE    A+  VG  G++   EG T+
Sbjct: 186 DTHIGELLAKAMERVGKEGVITVKEGRTI 214


>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
 Frame = +3

Query: 525 MFSKNGGPIPVNKN------LWSVSYCLVTASXALFITGDAL-LRRGSQE 653
           +FS    P+PVN++      LW +S+ L      LF+  ++L L  GS E
Sbjct: 45  VFSLLHTPLPVNRSQQANAPLWQLSFSLSILGTLLFVIAESLYLISGSDE 94


>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 45/158 (28%), Positives = 68/158 (43%), Gaps = 13/158 (8%)
 Frame = +3

Query: 105 ISAG-WQQWLATISLVSIQVCITLLLAAPGCPRGYMGPGGRHMSETTNTTLQN--CTGGI 275
           +S+G +Q ++A+  L     C  + LA  G   G   P   HM++ TN+ L       G 
Sbjct: 21  VSSGQFQNFIASCILFC---CPGIYLAVTGLGAGGGHPDAYHMADVTNSLLYALFTVCGW 77

Query: 276 AGYIDRMVLGPE-HLYKGGTFKSLY-DTVVPHDPEGILG--IFSGVLV-VQAG---AHAT 431
           AG      LGP   L  G T   +Y   +   D  G  G  IF+G    + AG   A   
Sbjct: 78  AGGPILKYLGPRWALALGATGYPIYIGGLWYFDNTGKQGFTIFTGAYEGIAAGLLWASTA 137

Query: 432 RIMLAYNHA--RARIMRWVFWSIVFGVTGGALCMFSKN 539
            I L+Y+ A  +++ +   +  + FG T G+   F  N
Sbjct: 138 YISLSYSCANQKSQFIATQWTILAFGSTVGSFIAFGIN 175


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 159 VCITLLLAAPGCPRGYMGPGGRHMSETTNTTL 254
           +CIT   ++P C    + PG   +S TTNT L
Sbjct: 455 ICITQ--SSPPCNISGIKPGSLKLSPTTNTVL 484


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,055,746
Number of Sequences: 5004
Number of extensions: 69122
Number of successful extensions: 199
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)