Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_D02
(657 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66562-6|CAA91463.1| 1266|Caenorhabditis elegans Hypothetical pr... 30 1.3
U59211-1|AAB09670.1| 420|Caenorhabditis elegans embryonic membr... 28 6.7
U53343-3|AAA96220.2| 420|Caenorhabditis elegans Innexin protein... 28 6.7
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 28 6.7
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 28 6.7
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 28 6.7
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a... 28 6.7
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 28 6.7
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 28 6.7
U29377-3|AAA68720.2| 472|Caenorhabditis elegans Hypothetical pr... 27 8.9
AL110490-16|CAB54451.2| 922|Caenorhabditis elegans Hypothetical... 27 8.9
>Z66562-6|CAA91463.1| 1266|Caenorhabditis elegans Hypothetical
protein F42E11.1 protein.
Length = 1266
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +3
Query: 468 IMRWVFWSIVFGVTGGALCMFSKNGGPIPVNKNLWSVSYCL--VTASXALFITGDALLRR 641
++R + W V G +F++ G +PVN + S+ + L VT++ FI+G L +
Sbjct: 714 LIRGITWPAFSVVYGQLFKVFAEGGEDLPVNALISSLWFVLLAVTSAVTTFISGSLLGKT 773
Query: 642 G 644
G
Sbjct: 774 G 774
>U59211-1|AAB09670.1| 420|Caenorhabditis elegans embryonic membrane
protein protein.
Length = 420
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -2
Query: 539 VLREHAQSPTGHTEDYRPEHPTHYTSPGMVVGQHD 435
+ ++H ++ H D+ H T TSPG+ G H+
Sbjct: 367 LFKKHGEN-LQHNRDFHHGHSTKSTSPGLEEGHHE 400
>U53343-3|AAA96220.2| 420|Caenorhabditis elegans Innexin protein 3
protein.
Length = 420
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -2
Query: 539 VLREHAQSPTGHTEDYRPEHPTHYTSPGMVVGQHD 435
+ ++H ++ H D+ H T TSPG+ G H+
Sbjct: 367 LFKKHGEN-LQHNRDFHHGHSTKSTSPGLEEGHHE 400
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = +2
Query: 152 YSGMHHATTGRPRLPPRVHGPRGSSHVGNDEHDPAELHRRHRWVH 286
+ G HH T P HG G+ H + EH A H H H
Sbjct: 405 HHGEHHGT----HHSPAHHGEHGTHHGHHGEHHHAPAHHGHHESH 445
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 349 IPWFPTTLRASWAYSPVCWSSRPVPTRPGSCW 444
I + TT R +W S S VPT+PG+ W
Sbjct: 2972 IDFVNTTSRGNWTVSTDAPSELIVPTQPGTKW 3003
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 349 IPWFPTTLRASWAYSPVCWSSRPVPTRPGSCW 444
I + TT R +W S S VPT+PG+ W
Sbjct: 2972 IDFVNTTSRGNWTVSTDAPSELIVPTQPGTKW 3003
>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
assigned gene nameprotein 192 protein.
Length = 2957
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 530 EHAQSPTGHTEDYR-PEHPTHYTSPGMVVGQHDP 432
+H Q+ +G+ + + P+HP + P V QH P
Sbjct: 511 QHQQNMSGYPQQQQQPQHPHQHQQPASVPMQHHP 544
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 349 IPWFPTTLRASWAYSPVCWSSRPVPTRPGSCW 444
I + TT R +W S S VPT+PG+ W
Sbjct: 2972 IDFVNTTSRGNWTVSTDAPSELIVPTQPGTKW 3003
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 349 IPWFPTTLRASWAYSPVCWSSRPVPTRPGSCW 444
I + TT R +W S S VPT+PG+ W
Sbjct: 2972 IDFVNTTSRGNWTVSTDAPSELIVPTQPGTKW 3003
>U29377-3|AAA68720.2| 472|Caenorhabditis elegans Hypothetical
protein K05F1.5 protein.
Length = 472
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 142 DIVASHCCHPAEMSRKRDRPGVMLCVLRMKAH 47
+IV HCC + ++ D C L+ KAH
Sbjct: 91 EIVGLHCCPITSLPKRLDSCSRPFCKLKKKAH 122
>AL110490-16|CAB54451.2| 922|Caenorhabditis elegans Hypothetical
protein Y48B6A.11 protein.
Length = 922
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -3
Query: 403 STPENMPRMPSGSWGTTVSYKDLKVPPLYKCSGPSTIRSMYPAM 272
S P + G +S K LK PL++ +G S + + YP M
Sbjct: 51 SRPLSPTMFTDGRTPVNISAKHLKDHPLHEPTGTSEVLTFYPTM 94
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,828,892
Number of Sequences: 27780
Number of extensions: 455789
Number of successful extensions: 1330
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1325
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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