Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_D01
(554 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S... 28 1.1
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch... 27 1.9
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 26 4.3
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom... 26 4.3
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 25 5.7
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam... 25 5.7
SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 5.7
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 25 7.5
SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated |Schizosac... 25 7.5
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 25 9.9
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 25 9.9
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|... 25 9.9
SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch... 25 9.9
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.9
>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
S28|Schizosaccharomyces pombe|chr 2|||Manual
Length = 288
Score = 27.9 bits (59), Expect = 1.1
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 371 DKIGASATAAHTDFINRNDYSLDGKLNLFKSPDTSVDLNA-GFKK 502
+KI ASAT DFI N+ +N F S DTS++ N GF++
Sbjct: 119 EKIRASATEETKDFIKLNE------VNEFPSSDTSLESNQDGFER 157
>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 27.1 bits (57), Expect = 1.9
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +2
Query: 410 FINRNDYSLDGKLNLFKSPDTSVDL 484
F N Y G N FK PD S+DL
Sbjct: 206 FTRENFYQKFGSPNCFKKPDGSIDL 230
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 25.8 bits (54), Expect = 4.3
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = -3
Query: 525 DFMKGVSNFLKPALRSTEVSGLLKRFSFPSRE*SLRLMKSV*AAVADAPILSLNI 361
DF K N L ++ FSF SRE S R +K + +A+ P L ++I
Sbjct: 576 DFAKVSDNLLFSNFVERWFQSVIGVFSFASRENSNRALKILKSAILYRPHLRMSI 630
>SPAC22A12.11 |dak1||dihydroxyacetone kinase
Dak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 25.8 bits (54), Expect = 4.3
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 2 RDAHGALTLNSDGTSGAGVKVPFAGNDKNIVSAI-GSLDLTNRQKLGAATAGVALDNV 172
RD + N DGTSGA + F G K + + S D+++ K AA VALD +
Sbjct: 445 RDIADVIEDNMDGTSGALYAIFFHGFAKGMKDTLEKSKDISS--KTWAAGLKVALDTL 500
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 149 AGVALDNVNGHGVSLTDTHIPG 214
A A+DN+ G SL H+PG
Sbjct: 178 AKAAIDNLVSIGASLAHVHVPG 199
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 25.4 bits (53), Expect = 5.7
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = -3
Query: 177 PFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPEVPSE 31
P T S++ V++ S + T+ ++ PA + TP P PS+
Sbjct: 155 PSTTDSSSTDVSSSDSVSTSASSSNASNTVSVTSPASSSATPLPNQPSQ 203
>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 25.4 bits (53), Expect = 5.7
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 339 VLKLGTLAISGIFLVAKAFAVMSWLSLWKRFTLPAAVTLS 220
++ G+L+I IF+ F + SW++L+ T A TLS
Sbjct: 401 IIVFGSLSI--IFIHIYCFKITSWVNLYGWITCTIARTLS 438
>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 115
Score = 25.4 bits (53), Expect = 5.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 470 TSVDLNAGFKKFDTPFMKSSWEPNFGFS 553
T ++ F+K++T F+KS + N G S
Sbjct: 30 TVENVGKSFEKYETSFLKSLFNGNLGLS 57
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +2
Query: 338 TVGGGIDYMFKD-KIGASATAAHTDFIN 418
+VG I Y +D K+ TA+H DF+N
Sbjct: 25 SVGRAIRYCKEDGKVEGCETASHVDFLN 52
>SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 7.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 398 AHTDFINRNDYSLDGKLNLFKSPDTSVDLNAGFKKFDTPFMKS 526
+H +F + ND+S KLN S + +K+ PF K+
Sbjct: 158 SHDNFSDSNDFSFQKKLNTEDSNTSKTSTLDMYKEKLKPFTKT 200
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 24.6 bits (51), Expect = 9.9
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = -3
Query: 180 WPFTLSSATPAVAAPSFCLLVKSKEPI-ALTIFLSLPAKGTLTPAPEVPSELS 25
+PF S P PS+ LV P LT+ + G L+ A +PS S
Sbjct: 271 YPFQQPSYNPNALVPSYTTLVSQLPPSPCLTV-----SSGPLSTASSIPSNCS 318
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 24.6 bits (51), Expect = 9.9
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 81 SLPAKGTLTPAPEVPSE 31
SLPA GT TP+P V +
Sbjct: 725 SLPAAGTATPSPVVSQQ 741
>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 467
Score = 24.6 bits (51), Expect = 9.9
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -2
Query: 271 VVIVVEEIHFAGSCHLVSEPG 209
+V + +IHF+G+C+ V+ G
Sbjct: 397 IVSIPHQIHFSGTCYSVAAGG 417
>SPAC22F8.12c |shf1||small histone ubiquitination factor
Shf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 165
Score = 24.6 bits (51), Expect = 9.9
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +2
Query: 419 RNDYSLDGKLNLFKSP-DTSVDLNAGFK 499
RNDY DG + ++SP ++VD N+ ++
Sbjct: 5 RNDYHYDGNDHQYRSPLKSNVDQNSFYE 32
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 24.6 bits (51), Expect = 9.9
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 257 HNDNHDITAKAFATRNMPDIANVPNFNT 340
H D+ DITA + +T P+ +V F++
Sbjct: 113 HPDSEDITAVSLSTPPFPESIDVARFSS 140
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,296,761
Number of Sequences: 5004
Number of extensions: 48700
Number of successful extensions: 161
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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