Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_C24
(590 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0260 - 15509658-15509780,15510092-15510161,15510265-155104... 30 1.6
10_05_0040 - 8463585-8464396,8464664-8465273,8465708-8466169 30 1.6
07_01_0239 + 1744353-1746365 30 1.6
02_04_0645 + 24703102-24704598 30 1.6
03_06_0140 + 31951569-31951710,31951943-31952037,31952141-319539... 29 2.8
04_04_0470 + 25474029-25475525 29 3.7
02_04_0646 + 24710348-24711838 28 4.8
03_05_0585 + 25869955-25869984,25870092-25870182,25870402-258705... 28 6.4
11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633,234... 27 8.5
10_08_0936 - 21679002-21679800,21679893-21680116,21681174-216813... 27 8.5
01_06_1782 - 39842133-39842160,39842531-39842657,39842980-39844675 27 8.5
>11_04_0260 -
15509658-15509780,15510092-15510161,15510265-15510438,
15511098-15511528
Length = 265
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = +1
Query: 139 LPRPISLVIIQHTVTPTCETNE-ACMVTMR-SLQDNHMDNLKYWDIGMNFVVGGNGKVYQ 312
LP P L+++Q T+ + A V R S + +D+ Y + VGG G Q
Sbjct: 5 LPLPALLLVVQPTMAVASHGGDGAAFVAARPSSVHSSLDDSAYGILNDGEGVGGGGGGEQ 64
Query: 313 GSGWLHVGAHTIGY 354
G GW + + Y
Sbjct: 65 GGGWANGSGYESRY 78
>10_05_0040 - 8463585-8464396,8464664-8465273,8465708-8466169
Length = 627
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +1
Query: 103 DWGGLS-PVHIEYLPRPISLVIIQHTVTPTCETNEACMVTMRS--LQDNHMDNLK 258
+WG + P I +LP I LVI + T P N ++T+RS L +N + N++
Sbjct: 410 EWGSVCIPPDIVHLPHLIHLVIPEGTGLPDGIGNLKSLITLRSFDLGENSLHNIR 464
>07_01_0239 + 1744353-1746365
Length = 670
Score = 29.9 bits (64), Expect = 1.6
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
Frame = +1
Query: 286 VGGNGKVYQG---SGWLHVGAHTIGYNRKSIGISFVGNYNNKEATNQQLEAVRSLLQCGV 456
VGG GKVY+G S L VG + ++ K FV + + V+ L C
Sbjct: 356 VGGFGKVYKGVLPSSKLEVGVKVMSHDSKQGMKEFVAEVVSMGRLRHR-NLVQLLGYCR- 413
Query: 457 KQGHLTSNYKVVGHRQVLATESPGRYLYNQIRRWPEWTENVE 582
++G L Y + + S +YLY+Q + P W + E
Sbjct: 414 RKGELLLVY------EYMPNGSLDKYLYDQDKPSPNWIQRFE 449
>02_04_0645 + 24703102-24704598
Length = 498
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 317 LDGFTSERTRSVTTGNLSGSASSVTTTI-KRQRTSNWKL*DHC 442
+DG S R+ T +L+GS +++TT KR T +W + D C
Sbjct: 271 IDGQWSAVGRTAVTTSLAGSVAALTTLYGKRWLTGHWNVTDVC 313
>03_06_0140 +
31951569-31951710,31951943-31952037,31952141-31953982,
31954065-31954179,31954260-31954897
Length = 943
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +1
Query: 190 CETNEACMVTMRSLQDNHMDNLKYWDIGMN 279
C M+ R +Q+NH D WD G N
Sbjct: 868 CTAENLRMILHRDMQNNHPDANSMWDFGWN 897
>04_04_0470 + 25474029-25475525
Length = 498
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 317 LDGFTSERTRSVTTGNLSGSASSVTTTI-KRQRTSNWKL*DHC 442
++G S R+ T L+GS +++TT KR +T +W + D C
Sbjct: 269 INGQWSGVGRTAVTTTLAGSVAALTTLFGKRLQTGHWNVVDVC 311
>02_04_0646 + 24710348-24711838
Length = 496
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 344 RSVTTGNLSGSASSVTTTI-KRQRTSNWKL*DHC 442
R+ T L+GS +++TT KR +T +W + D C
Sbjct: 278 RTAVTTTLAGSTAALTTLFGKRLQTGHWNVIDVC 311
>03_05_0585 +
25869955-25869984,25870092-25870182,25870402-25870551,
25870687-25870774,25871096-25871590,25871755-25871890,
25872117-25872310,25872421-25872529,25872685-25872796,
25873260-25873339,25873503-25873607
Length = 529
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/71 (23%), Positives = 35/71 (49%)
Frame = +1
Query: 43 FTIFLSWKSVRADCGVVSKKDWGGLSPVHIEYLPRPISLVIIQHTVTPTCETNEACMVTM 222
+ I LS++SV+A +V +W L + + + + + HT TPT T+ + +
Sbjct: 405 YRIALSYRSVKA---LVEMHNWKQL--LEKDQAGKKGGFIFLPHTNTPTILTDTQATICV 459
Query: 223 RSLQDNHMDNL 255
R + H+ ++
Sbjct: 460 RMRSEEHLHDI 470
>11_01_0315 -
2347254-2347345,2347485-2347895,2348182-2349633,
2349688-2350045,2350818-2351177,2351321-2351419,
2351856-2351948,2352078-2352215,2352389-2352476,
2352682-2352770,2353113-2353178,2353370-2353481,
2354702-2354901
Length = 1185
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -1
Query: 170 WIITRLIGRGKYSICTGDSPP--QSFLETTPQSARTLFQLKNI 48
W + R + + + +C GD P +S TP + +L+++
Sbjct: 668 WYVVRFVSKHNHPLCKGDQVPFLRSHRRITPAEQAKMVELRDV 710
>10_08_0936 -
21679002-21679800,21679893-21680116,21681174-21681361,
21681505-21682597
Length = 767
Score = 27.5 bits (58), Expect = 8.5
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +1
Query: 73 RADCGVVSKKDWGGLSPVHIEYLPRPISL 159
R++CG ++ ++GG +P P P+ L
Sbjct: 265 RSECGFAARSEYGGTAPSEYAAAPLPLPL 293
>01_06_1782 - 39842133-39842160,39842531-39842657,39842980-39844675
Length = 616
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +1
Query: 412 NQQLEAVRSLLQCGVKQGHLTSNYKVVGHRQVLATESPGRYLYNQIRR 555
N+ LE + +L+CG+K + + V Q+ A E GR+L++ + +
Sbjct: 292 NEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQ-GRWLHSYLEK 338
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,553,905
Number of Sequences: 37544
Number of extensions: 388729
Number of successful extensions: 1054
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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