Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_C20
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.0  
SPBC13G1.03c |pex14||peroxisomal membrane anchor protein|Schizos...    26   3.2  
SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr...    25   4.2  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    25   4.2  
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p...    25   5.6  
SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|c...    24   9.7  
SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Sch...    24   9.7  
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2...    24   9.7  

>SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 90  GAGVDYMFKDKIGASATAAHTDVFDRNDYSLGG 188
           G+G   +F DK G    A     FD+ DYS  G
Sbjct: 61  GSGASIIFADKAGLKFEAERYGKFDQIDYSTKG 93


>SPBC13G1.03c |pex14||peroxisomal membrane anchor
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 7   TTTTISVPK-HSPLKTCQIFLKFRTSTLSVPEW 102
           TT+  S+P   +PL T + F   +  T S+P+W
Sbjct: 225 TTSNSSIPVLENPLDTSEGFQTKKVGTASLPDW 257


>SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 304 ENEKLVLGSHEDLMKGVSNFFQPALK 227
           EN  L + SH DL++ V NF   A K
Sbjct: 72  ENVLLKIASHVDLVEPVENFISTAKK 97


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 241 GRSSIRLSLSPRGNPALVSRFPNISKL 321
           G  ++ LSL  + +P+L ++F  ISKL
Sbjct: 799 GYGTVGLSLGYKNDPSLTAQFRKISKL 825


>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 77  VRNLRNIWHVFSGEC 33
           + N R++WH F G C
Sbjct: 126 IHNYRDLWHSFKGMC 140


>SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 217

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 313 KYLENEKLVLGSHEDLMKGVSNFFQPALKSSDVVG 209
           ++LEN+KL L SHE+  +       P  K    VG
Sbjct: 53  QFLENDKLDLNSHENEGEKTKTETVPTRKQFPKVG 87


>SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 182 GGKTESL*DSDHIAGLQRRLEE 247
           GGK+ +  D+D +AG + +LEE
Sbjct: 249 GGKSGTNFDADSVAGAKAKLEE 270


>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 56  WHVFSGECFGTEIVVV 9
           W VFSG  +GT I+ +
Sbjct: 87  WAVFSGNMYGTSIMAI 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,767,740
Number of Sequences: 5004
Number of extensions: 34459
Number of successful extensions: 99
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)