Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_C20
(459 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0216 - 14954047-14956098 34 0.048
04_04_1293 - 32418156-32418584,32420155-32420270,32421798-32421864 29 1.8
01_06_0645 + 30826267-30826307,30826403-30826454,30826580-308266... 29 2.4
12_02_0244 - 16241243-16241279,16241781-16241848,16241930-162420... 28 3.1
08_01_0663 + 5721902-5723176,5724162-5724233,5724405-5724560,572... 28 3.1
07_03_1555 - 27669981-27670148,27670232-27670315,27670349-276703... 27 5.5
04_03_0615 + 18048787-18048865,18048897-18049753 27 5.5
11_04_0009 - 12132781-12133272 27 7.3
09_03_0172 - 13072575-13073800,13075919-13076054 27 7.3
05_06_0268 + 26792845-26792891,26793050-26793830 27 7.3
05_06_0010 - 24835896-24836131,24836838-24837111,24837314-248374... 27 7.3
10_07_0176 - 13826764-13827064,13827271-13827377,13827474-138278... 27 9.6
02_05_0157 - 26353971-26354336,26354645-26354726,26354838-263549... 27 9.6
>11_04_0216 - 14954047-14956098
Length = 683
Score = 34.3 bits (75), Expect = 0.048
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -2
Query: 308 FGKRETSAGFPRGLNERRIELLPTGVEVQRCGRSLKEIQFSPQRVV 171
FG GF G+ E+R+E P VE+++C K + +R++
Sbjct: 249 FGSSSDGDGFSDGVEEKRLECDPVSVEIKKCEPPAKSLSSVSRRIL 294
>04_04_1293 - 32418156-32418584,32420155-32420270,32421798-32421864
Length = 203
Score = 29.1 bits (62), Expect = 1.8
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +3
Query: 66 QVPNFNTVGAGVDYMFKDKIGASATAAHTDVFDRNDYSLGGKLNLFKTPTTSLDFNAG 239
+ P + A D + + A+A A VFD D+ +GGK + PT + D + G
Sbjct: 34 EAPGGGALLAAGDDVTAANLFAAAVATEGPVFDMPDFKMGGKKSDDAAPTDAGDEDGG 91
>01_06_0645 +
30826267-30826307,30826403-30826454,30826580-30826659,
30826804-30826882,30826962-30827045,30827131-30827276,
30827362-30827628,30827825-30827907,30828162-30828271,
30828544-30829159,30829471-30829620,30829700-30829800
Length = 602
Score = 28.7 bits (61), Expect = 2.4
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = +3
Query: 3 HNDNHDFSAKAFATKNMPNI--PQVPNFNTVGAGVDYMFKDKIGASATAAHTDVFDRNDY 176
+ D+ DF+ + F+T PN+ P VP + + A + + +AT +HT D+ D
Sbjct: 263 NEDDDDFNPRGFSTSTTPNVSTPAVPEVD-LFADAAFQSANAPLEAATVSHTQ--DKIDL 319
Query: 177 SLGGKLNLFKTPTTSLDFN 233
G+L+ + T+ +F+
Sbjct: 320 -FAGRLSSADSFTSDTEFS 337
>12_02_0244 -
16241243-16241279,16241781-16241848,16241930-16242032,
16242095-16242256,16242305-16242369,16242547-16242612,
16242738-16242829,16243029-16243134,16243231-16243279,
16243387-16243540,16243661-16243687,16243797-16243959,
16244621-16244701
Length = 390
Score = 28.3 bits (60), Expect = 3.1
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = -2
Query: 134 RCTNLVLEHVVHSGTDSVEVRN--LRNIWHVFSGECF 30
R NLV+++V HSG + +++ LRN+ FS CF
Sbjct: 354 RLQNLVMQNVDHSGGEFIDLLQGLLRNMLFGFSRICF 390
>08_01_0663 +
5721902-5723176,5724162-5724233,5724405-5724560,
5724655-5724844,5725173-5725255
Length = 591
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 116 LEHVVHSGTDSVEVRNLRNIWHVFSGECFGTEIVVVV 6
LE + HSG + +V L N W+++ F + VV+V
Sbjct: 417 LELLAHSGEVNKQVPRLSNFWNMYFTHHFQVDTVVMV 453
>07_03_1555 - 27669981-27670148,27670232-27670315,27670349-27670360,
27670683-27670761,27670840-27671078,27671167-27671260,
27671342-27671484,27671688-27671786,27671870-27671998,
27672123-27672197,27672308-27672520,27672581-27672676,
27673282-27673380,27673600-27673839,27674212-27674322,
27674429-27674626,27674720-27674835,27675076-27675193,
27675761-27675866,27675972-27676030,27676259-27676388,
27676730-27676887,27677672-27677887,27677972-27678082,
27678313-27678472,27679364-27679509,27679603-27679695,
27680610-27680706,27681224-27681294,27681407-27681505,
27682037-27682168,27682287-27682729,27683252-27683564,
27684301-27684549
Length = 1631
Score = 27.5 bits (58), Expect = 5.5
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +1
Query: 4 ITTTTISVPKHSPL-KTCQIFLKFRTSTLSVPEWTTCS-RTRLVHLRPPLTPMSLI 165
I T I KH L KT I LK+ S+ +P+W++ R++ VH P+ +++
Sbjct: 1300 IGRTDILKAKHVSLAKTQHIDLKYLLSSAGLPKWSSSQIRSQDVHSNGPVLDETIL 1355
>04_03_0615 + 18048787-18048865,18048897-18049753
Length = 311
Score = 27.5 bits (58), Expect = 5.5
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +1
Query: 229 STPVGRSSIRLS--LSPRGNPALVSRFPNISKLK 324
S P R++IRL L+ P L SRFPN+ K++
Sbjct: 24 SFPEQRATIRLDCGLATEAFPTLCSRFPNLLKVE 57
>11_04_0009 - 12132781-12133272
Length = 163
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 63 PQVPNFNTVGAGVDYMFKDKIGASATAAHTDVFDRNDYSLGG 188
P V +F+ G GVD M + + A+A++A D+S GG
Sbjct: 19 PPVADFD--GEGVDGMAPEAVNATASSARLGAVASGDWSGGG 58
>09_03_0172 - 13072575-13073800,13075919-13076054
Length = 453
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 182 QRVVVTIKDIGVSGGRRCTNLVLEHVV 102
+ V++T+KD+ GGR CT L E +
Sbjct: 281 RNVILTMKDLTAVGGRFCTYLSKEKAI 307
>05_06_0268 + 26792845-26792891,26793050-26793830
Length = 275
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +1
Query: 31 KHSPLKTCQIFLKFRTSTLS---VPEWTTCSRTRLVHLRPPLTP 153
KH ++TC + + + + + +P+W ++ + +PP TP
Sbjct: 98 KHRAIRTCLLTVAYHSPSSEPSVIPDWDCSKQSTVNPAQPPFTP 141
>05_06_0010 -
24835896-24836131,24836838-24837111,24837314-24837462,
24837813-24838040,24838347-24838587
Length = 375
Score = 27.1 bits (57), Expect = 7.3
Identities = 25/75 (33%), Positives = 35/75 (46%)
Frame = +3
Query: 18 DFSAKAFATKNMPNIPQVPNFNTVGAGVDYMFKDKIGASATAAHTDVFDRNDYSLGGKLN 197
DF A+ F +P + N ++V GV++ GA AT D F+RN+ +
Sbjct: 78 DFIAEEFELPLLP--ASMANSSSVSNGVNFAVG---GALATGI--DYFERNN------IV 124
Query: 198 LFKTPTTSLDFNAGW 242
FK TSLD GW
Sbjct: 125 SFKLLNTSLDVQLGW 139
>10_07_0176 -
13826764-13827064,13827271-13827377,13827474-13827836,
13827912-13828079,13828153-13828374,13828784-13829023,
13829640-13829719,13829853-13830018,13830720-13830783,
13830861-13830962,13831085-13831227,13831370-13831474,
13831551-13831706,13832125-13832241,13832315-13832392,
13832466-13832550,13833334-13833455,13833546-13833611,
13835190-13835284,13835427-13835523,13835873-13835983,
13836083-13836164,13836292-13836353,13836620-13836685,
13838002-13838232
Length = 1142
Score = 26.6 bits (56), Expect = 9.6
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 3 HNDNHDFSAKAFATKNMPNIPQVPNFNTVGAGVDYMFKDKIG 128
+ND H + A++ N P + + N N V+Y+F DK G
Sbjct: 377 NNDLHMYHAES----NTPALARTSNLNEELGQVEYIFSDKTG 414
>02_05_0157 -
26353971-26354336,26354645-26354726,26354838-26354933,
26355365-26356068
Length = 415
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 111 TCSPLRHRQC*SSELEEYLACF*WRMLW 28
TCSP+ + + +LEE++ F R LW
Sbjct: 339 TCSPIANGGIGALDLEEFICAFHVRWLW 366
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,222,926
Number of Sequences: 37544
Number of extensions: 226280
Number of successful extensions: 635
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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