Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_C20
         (459 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039719-12|AAB96758.1|  293|Caenorhabditis elegans Hypothetical...    28   2.8  
Z81520-4|CAE17808.1|  181|Caenorhabditis elegans Hypothetical pr...    28   3.8  
Z82267-3|CAB05191.1|  186|Caenorhabditis elegans Hypothetical pr...    27   6.6  
AC084197-6|AAO38572.1|  328|Caenorhabditis elegans Serpentine re...    27   6.6  
U64843-11|AAL08038.1|  365|Caenorhabditis elegans Hypothetical p...    27   8.7  

>AF039719-12|AAB96758.1|  293|Caenorhabditis elegans Hypothetical
           protein K04F10.7 protein.
          Length = 293

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +2

Query: 23  QCQSIRH*KHAKYSSSSELQHCRCRSGLHVQGQDWC 130
           QCQ  +    AKY      Q+C+  +  H Q   WC
Sbjct: 25  QCQKCQK-NEAKYGKPGTCQYCKLNAAFHDQKCVWC 59


>Z81520-4|CAE17808.1|  181|Caenorhabditis elegans Hypothetical
           protein F31B9.4 protein.
          Length = 181

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +1

Query: 22  SVPKHSPLKTCQIFLKFRTSTLSVPEWTTCSRTRLVHLRPPLTPMSLIVTTT 177
           S+P   P+ T  I     T+T + P     + T    + PP    + I+TTT
Sbjct: 11  SIPSRDPVITTTIRPNSTTTTTTSPAPNITTTTTTTTIAPPTNTTTTILTTT 62


>Z82267-3|CAB05191.1|  186|Caenorhabditis elegans Hypothetical
           protein F38C2.5 protein.
          Length = 186

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 54  PNIPQVPNFNTVGAGVDYMFKDKIGASATAAHTD 155
           P +PQ  ++    +G+   F D  GASA+++ TD
Sbjct: 151 PLMPQFSSWFAPSSGLSREFLDNFGASASSSSTD 184


>AC084197-6|AAO38572.1|  328|Caenorhabditis elegans Serpentine
           receptor, class v protein25 protein.
          Length = 328

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 400 IHYVKKMITLKLWFLIITLSFKLMTV 323
           ++Y+   ITL ++FL+ T  F+L  +
Sbjct: 16  VYYITSAITLPIYFLVFTCLFRLRCI 41


>U64843-11|AAL08038.1|  365|Caenorhabditis elegans Hypothetical
           protein K06C4.17 protein.
          Length = 365

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/47 (25%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
 Frame = -3

Query: 412 YLQIIHYVKKMI--TLKLWFLIITLSFKLMTVLI*KYLENEKLVLGS 278
           +L+++ YV++ +    K++FL+  ++  ++ +L  KY  NE++ + S
Sbjct: 224 FLKVVQYVEENVFSVFKIFFLLFIINVSIILLL--KYSHNERIRMTS 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,813,874
Number of Sequences: 27780
Number of extensions: 199856
Number of successful extensions: 589
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)