Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_C19
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...   171   6e-44
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   3.3  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   4.4  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    26   4.4  

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score =  171 bits (417), Expect = 6e-44
 Identities = 86/152 (56%), Positives = 106/152 (69%), Gaps = 3/152 (1%)
 Frame = +1

Query: 88  KAVCVLHGD--VSGTVFFDQKDESSPVVVSGEVKGL-SKGKHGFHVHEFGDNTNGCTSAG 258
           +AV VL GD  VSG V F+Q D++S V V  ++ G  +  K GFH+H+FGDNTNGCTSAG
Sbjct: 3   RAVAVLRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAG 62

Query: 259 AHFNPLKQEHGAPDSDTRHIGDLGNIEASSDGGVTKVCIQDSQISLVGPNSIVGRTLVVH 438
            HFNP  + HG   +  RH+GDLGN+E+ + G + K    DS ISL G NSI+GRT+V+H
Sbjct: 63  PHFNPEGKTHGDRTAAVRHVGDLGNLESDAQGNI-KTTFSDSVISLFGANSIIGRTIVIH 121

Query: 439 ADPDDLGLGGHELSKSTGNAGARIACGVIGLA 534
           A  DDLG G  E S  TGNAGAR ACGVIG+A
Sbjct: 122 AGEDDLGKGTSEESLKTGNAGARNACGVIGIA 153


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 586  EPINYKSLGVLEEKLKSWLI 527
            E IN++  GVL   LK+WL+
Sbjct: 1349 EEINFQEAGVLTAPLKNWLV 1368


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 424  CVQQCCWVQLTRSESP 377
            C Q+CC + LT S+SP
Sbjct: 1422 CAQECCRILLTDSKSP 1437


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/69 (21%), Positives = 29/69 (42%)
 Frame = +1

Query: 106 HGDVSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGAHFNPLKQE 285
           H     +++FD  DE +    +  +  +++   G +  +  +  NG  S     N  K+E
Sbjct: 24  HPSAGDSIYFDSLDEDADPSRTARIDRIAELLDGLNDEQISELVNGVNSTTIKEN-TKKE 82

Query: 286 HGAPDSDTR 312
              P+  TR
Sbjct: 83  ISNPNDSTR 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,774,875
Number of Sequences: 5004
Number of extensions: 57435
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)