Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_C17
(490 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 32 0.040
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 30 0.16
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 29 0.50
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 28 0.66
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ... 27 1.5
SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su... 25 4.6
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 25 4.6
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 25 4.6
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 25 4.6
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 25 6.1
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 6.1
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 25 8.1
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M... 25 8.1
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar... 25 8.1
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 32.3 bits (70), Expect = 0.040
Identities = 15/55 (27%), Positives = 32/55 (58%)
Frame = -3
Query: 170 KNLAFRYWDPSRLSMRTRALYKHRYCALKEGMLG*HTYVANFIFKIFSCFYISFI 6
KN+ +R +D R++ R L K +Y ++ +T+ +F++ +++CFY+ I
Sbjct: 916 KNITWRKFD-QRVATIIRYLQKKKYIKPGRVVVLMYTHSEDFVYALYACFYLGLI 969
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 30.3 bits (65), Expect = 0.16
Identities = 21/97 (21%), Positives = 50/97 (51%)
Frame = +3
Query: 195 SEDERLELMRLHNNYKTQMRAIRRFYHEDMIKEKSTKDSASSEMSRRLEADDWARCVELN 374
S+DERL ++ L ++ +++R +R++ EDM+ ++ R +WA+ ++
Sbjct: 104 SDDERL-MISLQDH--SRLRKLRQYEDEDMVNGLQYARRLRTQFERVYPVPEWAKKQDVT 160
Query: 375 EKWNAEVALEREARRKHEIAAMEEYTMARIEAKSKEL 485
E+ + AL ++ + ++ + +++ I SK L
Sbjct: 161 EEEDEFNALSEKSVIPKSLKSLFKSSVSYINQSSKLL 197
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 28.7 bits (61), Expect = 0.50
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +3
Query: 276 EDMIKEKSTKDSASSEMSRRLEADDWARCVELNEKWNAEVALEREARRKHEIAAMEEYTM 455
+D+ +E K + E+ RR+EA+ E E W +AL R H + + E M
Sbjct: 619 KDVTEEYIAKQA--EELERRVEAEQLLSNFEQTEDWQQAIALALSLDRPHGLLRLFERVM 676
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 28.3 bits (60), Expect = 0.66
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 315 SSEMSRRLEADDWA-RCVELNEKWNAEVALEREARRKHEIAAMEEYTMARIEA 470
S + +R LE D A ++++E W ++ E RRK I+ + RI+A
Sbjct: 336 SKDRNRALEGDVVAIELLDVDEVWAGKLEKEENRRRKDPISTRGSFDNLRIDA 388
>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 607
Score = 27.1 bits (57), Expect = 1.5
Identities = 11/55 (20%), Positives = 30/55 (54%)
Frame = +3
Query: 147 PIAKSKIFRIPKRPVVSEDERLELMRLHNNYKTQMRAIRRFYHEDMIKEKSTKDS 311
PI K +P+ +ED+RL+ + + +++A++ +D+++++ + S
Sbjct: 536 PIVKKARIEKSGKPIFAEDDRLKQLYIEGVLDKEIKALKVSQLKDILRDRGLRVS 590
>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 306
Score = 25.4 bits (53), Expect = 4.6
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +3
Query: 240 KTQMRAIRRFYHEDMIKEKSTKDSASSEMS-RRLEADDWARCVELNEKWNAEVALEREAR 416
++ + IR +E ++ + K+ ++S RR+ +D +C E K A ++ R
Sbjct: 57 RSVQKHIRVGRNEVVVVLRVDKEKGYIDLSKRRVSPEDVVKCEERFNKSKAVHSIMRHIA 116
Query: 417 RKHEIAAMEEYT 452
KH + YT
Sbjct: 117 EKHNVPLETMYT 128
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 25.4 bits (53), Expect = 4.6
Identities = 22/92 (23%), Positives = 37/92 (40%)
Frame = -3
Query: 347 ISFQTSGHFRTRTVFR*LLFNHILVVKSSYRSHLSFIIVMETH*F*AFVFRDYRSFWYTK 168
+ ++ GH TR +F L V+ + HL+ +I E+ D + W
Sbjct: 882 LDYRLEGH--TRIIFSKALNTGQQAVRLTATKHLAALINSESA-------NDNLNHWAIS 932
Query: 167 NLAFRYWDPSRLSMRTRALYKHRYCALKEGML 72
L F+ +DP +T + CA E +L
Sbjct: 933 LLIFQLYDPCLEVCKTAVKVLNEVCARNENLL 964
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 25.4 bits (53), Expect = 4.6
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -2
Query: 270 KIFLSLSSEFYNCYG 226
++FL LS EFY+C G
Sbjct: 7 RLFLHLSKEFYDCCG 21
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 25.4 bits (53), Expect = 4.6
Identities = 17/60 (28%), Positives = 24/60 (40%)
Frame = +3
Query: 273 HEDMIKEKSTKDSASSEMSRRLEADDWARCVELNEKWNAEVALEREARRKHEIAAMEEYT 452
H I KS + ASS + RR++A D R L++ R + M YT
Sbjct: 675 HGGSITGKSIVEQASSPLERRMDAFDENRAFTLDDIPKVISEQRNREHRPNAFRHMPSYT 734
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 25.0 bits (52), Expect = 6.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 344 SFQTSGHFRTRTVFR*LLFNHILVVKSSYRSH 249
S Q GH+ TRTVF+ L N + K + + H
Sbjct: 694 SIQHPGHWETRTVFQALCQNIDIFGKPTKKFH 725
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 25.0 bits (52), Expect = 6.1
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1
Query: 61 VCYPNMPSFNAQYL 102
VCYP+MP FN QY+
Sbjct: 679 VCYPSMPFFN-QYV 691
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 24.6 bits (51), Expect = 8.1
Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Frame = +3
Query: 234 NYKTQMRA--IRRFYHEDMIKEKSTKDSASSEMSRRLEADDWARCVELNEKWNAEVALER 407
NY+ R+ ++ FY +D S +S LEA A+ + + +NA+VAL R
Sbjct: 505 NYQEDDRSEDMQNFY-QDSKSNHWEAQIVSYHISGLLEAGLEAKDIAVVTPYNAQVALIR 563
Query: 408 EARRKHEIAAMEEYTMARIEAKSKE 482
+ ++ I +E ++ +++ + KE
Sbjct: 564 QLLKEKGI-EVEMGSVDKVQGREKE 587
>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 24.6 bits (51), Expect = 8.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 449 VLLHCCDFMFPPCLAFQSHF 390
VLL CC ++F C ++HF
Sbjct: 317 VLLLCCYYIFDTCNGQKNHF 336
>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 559
Score = 24.6 bits (51), Expect = 8.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 470 SFNSSHCVLLHCCDFMFPPCLAFQS 396
S S C+ + C DFMF C FQS
Sbjct: 57 SNEKSFCIRIQCRDFMF-FCWRFQS 80
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,001,838
Number of Sequences: 5004
Number of extensions: 39335
Number of successful extensions: 158
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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