Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_C17
(490 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1236 + 25454371-25456801,25456891-25457177,25457258-254574... 35 0.040
11_06_0632 + 25674807-25675477,25676472-25677861,25677948-256780... 30 1.1
05_07_0112 - 27755604-27756449,27756624-27756887,27757428-277575... 29 1.5
02_02_0526 + 11185825-11186832,11187795-11187869 29 2.0
09_04_0160 + 15226762-15227032,15227138-15227373,15227469-152275... 29 2.6
02_05_1010 + 33477878-33478446,33478709-33478834,33478905-334791... 29 2.6
10_02_0139 + 5753426-5754841,5755566-5755655,5756011-5756379,575... 28 3.5
07_03_1424 - 26474464-26474514,26474549-26474635,26474905-264750... 28 3.5
10_08_0781 + 20509033-20509714,20510048-20510191,20510604-205107... 27 6.1
04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814 27 6.1
09_01_0019 + 403078-404211 27 8.1
07_03_1028 - 23378140-23378802 27 8.1
04_01_0350 - 4610444-4610668,4612181-4612969 27 8.1
01_01_0455 - 3379727-3381058 27 8.1
>08_02_1236 + 25454371-25456801,25456891-25457177,25457258-25457416,
25457561-25457740,25457823-25458017,25459059-25459157,
25459508-25460137,25460250-25460591
Length = 1440
Score = 34.7 bits (76), Expect = 0.040
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 6/126 (4%)
Frame = +3
Query: 87 QRTIPMFIQSASAH-RKPRWIPIAKSKIFR---IPKRPVVSEDERLELMRLHNNYKTQMR 254
++T P+ S S+ KP+ + + SK IP+R V + E+ + R + +
Sbjct: 1206 EKTFPVLQSSQSSKPSKPKVVGNSSSKDTPGAPIPEREDVEKSEKEKKRRTEQELELSRQ 1265
Query: 255 AIRRFYHEDMIKEKSTKDSASSEMSR-RLEADDWARCVELNEKWNAEVALER-EARRKHE 428
A E+ +++ + A++E R RLE A+ E ++ AE ALER E R K E
Sbjct: 1266 AAELAIREEELRQ----EKAAAEKERLRLEQKAKAKEAEERKRRKAEKALERAEFRAKKE 1321
Query: 429 IAAMEE 446
ME+
Sbjct: 1322 AELMEK 1327
>11_06_0632 +
25674807-25675477,25676472-25677861,25677948-25678083,
25678185-25678282,25678470-25678535,25678699-25678827,
25679570-25679746,25680576-25680614
Length = 901
Score = 29.9 bits (64), Expect = 1.1
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
Frame = +3
Query: 186 PVVSEDERLELMRLHNNYKTQMRAIR-RFYHEDMIKEKSTKDSASSEMSRRLEADDWARC 362
P +E L+ M K+QM + F+ E E+++ D E RLE + +
Sbjct: 455 PDQAEVSSLDEMEGFAKDKSQMPSYDDNFFGEAEQSERTSSDREEKERQARLEQEQEMKL 514
Query: 363 VELNEKWNAEVALER--EARRKHEIAAMEEYTMARIEAKSKE 482
+E ++ + ER E +++ E AME T E S E
Sbjct: 515 MEEKKREQRRLEKERELEQQKERERQAMERATKEARERASAE 556
>05_07_0112 -
27755604-27756449,27756624-27756887,27757428-27757532,
27757626-27758249,27759048-27759596,27759665-27760372,
27760449-27760658,27761266-27761421,27761524-27761664,
27762015-27762101,27762209-27762309,27763071-27763293,
27763384-27763548,27763621-27763713,27763801-27764292,
27764729-27764805,27765184-27765681,27765818-27766046
Length = 1855
Score = 29.5 bits (63), Expect = 1.5
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 9/100 (9%)
Frame = +3
Query: 183 RPVVSEDE--RLELMRLHNN---YKTQMRAIRRFYHEDMIKEKSTKDSASSEMSRRLEAD 347
R V +D+ R+E R H+ ++ A + +++ K+ ++ R +E +
Sbjct: 416 RMVYHDDDAFRMERKRKHSEEVKIAKEVEAHEKRIRKELEKQDMLNRKREEQVRREMERN 475
Query: 348 DWARCVE----LNEKWNAEVALEREARRKHEIAAMEEYTM 455
D R E L EK E +RE RR+H+ ME+Y +
Sbjct: 476 DRERRKEEERLLREKQKEEERFQREQRREHK--RMEKYLL 513
>02_02_0526 + 11185825-11186832,11187795-11187869
Length = 360
Score = 29.1 bits (62), Expect = 2.0
Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Frame = +3
Query: 135 PRWIPIAKSKIFRIPKRPVVSEDERLELMRLHNNYKTQMRAIRRFYHEDMIKEK---STK 305
P ++P ++ R+ + + RLEL + + RR +++IKE+ +T
Sbjct: 160 PLFVPKSQRDTIRLREEEQHRQRRRLELELDKKRLEDRKAQTRRILLQEIIKEELLAATT 219
Query: 306 DSASSEMS-RRLEADDWARCVELNEKWNAEVALEREARRKHEIAAMEEYTMA 458
SA +E + ++ DD E +E W A +R E + ++E +A
Sbjct: 220 ASAEAEAAIDGVDTDDEVDQAEEHESWRRREA--ARVKRSREESGIDENPVA 269
>09_04_0160 +
15226762-15227032,15227138-15227373,15227469-15227565,
15227657-15227783,15227870-15228482,15228572-15228835,
15228918-15229130,15229253-15229460,15229552-15229748,
15229830-15230183,15230287-15230874
Length = 1055
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +3
Query: 114 SASAHRKPRWIPIAKSKIFRIPKRPVVSEDERLELMR--LHNNYKTQMRAIRRFYHEDMI 287
S +A +W+P K K P+ P ++++ ++ +H N+ + RA++R Y E +
Sbjct: 398 SETAEFARKWVPFCK-KFSIEPRAPEFYFSQKVDYLKDKVHPNFVQERRAMKREYEEFKV 456
Query: 288 K 290
+
Sbjct: 457 R 457
>02_05_1010 +
33477878-33478446,33478709-33478834,33478905-33479190,
33479293-33479484,33479641-33479870,33480379-33480718,
33481673-33481789,33481940-33482014
Length = 644
Score = 28.7 bits (61), Expect = 2.6
Identities = 22/58 (37%), Positives = 28/58 (48%)
Frame = +3
Query: 264 RFYHEDMIKEKSTKDSASSEMSRRLEADDWARCVELNEKWNAEVALEREARRKHEIAA 437
RF H DM+ + D +SS + + AR NE+ AE A E EARR AA
Sbjct: 471 RFRHRDMLPPPDSADLSSSRSRYTNDDEHDARQHAGNEEQPAE-APETEARRADAAAA 527
>10_02_0139 +
5753426-5754841,5755566-5755655,5756011-5756379,
5756796-5756982,5757567-5757631
Length = 708
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 382 GTLKWLWNARQGGNMKSQQWRSTQ 453
G L WLW+A QGG+ QQ R Q
Sbjct: 655 GILMWLWHA-QGGHKLHQQMREEQ 677
>07_03_1424 - 26474464-26474514,26474549-26474635,26474905-26475006,
26475149-26475260,26475405-26475463,26475559-26475633,
26475734-26475832,26476128-26476343,26476426-26476500,
26476583-26476670,26476757-26476902,26477240-26477347,
26477417-26478436,26478437-26478715,26479471-26480520,
26480636-26480692,26480780-26480837,26481379-26481458,
26481598-26481654,26481764-26481833,26481967-26482202,
26482341-26482445,26482534-26482680,26482758-26482823,
26482916-26482979,26484040-26484200,26484308-26484400,
26484487-26484600,26484684-26484803,26484893-26484976,
26485061-26485216,26485389-26485811
Length = 1885
Score = 28.3 bits (60), Expect = 3.5
Identities = 25/112 (22%), Positives = 46/112 (41%)
Frame = +3
Query: 108 IQSASAHRKPRWIPIAKSKIFRIPKRPVVSEDERLELMRLHNNYKTQMRAIRRFYHEDMI 287
I A K + I + + + V E+E L +Y+ ++ E I
Sbjct: 1484 ISKVYAEEKEEEVRILERSVEELESTITVLEEEVCNLKEEVRSYQIYKKSEAEQAQEMFI 1543
Query: 288 KEKSTKDSASSEMSRRLEADDWARCVELNEKWNAEVALEREARRKHEIAAME 443
+ ++K A+ ++ RC +L ++ AE+ ++ARRK E ME
Sbjct: 1544 VDSTSKCDATEQLCP-------GRC-QLEKRLKAEIIAHQDARRKIECLTME 1587
>10_08_0781 +
20509033-20509714,20510048-20510191,20510604-20510719,
20511356-20511520,20511822-20512043,20512613-20512735
Length = 483
Score = 27.5 bits (58), Expect = 6.1
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = +3
Query: 192 VSEDERLELMRLHNNYKTQMRAIRRFYHEDMIKEKST--KDSASSEMSRRLEADDWARCV 365
+SE+E + L + T+ R++ F +K S+ KD+ +++ ADD +
Sbjct: 320 LSEEEIVGLREMFKAMDTKNRSVVTFGELKGLKRYSSVFKDTEINDLMEA--ADDTTSTI 377
Query: 366 ELNEKWNAEVALEREARRKHEIAA 437
E A V+L + R KH +AA
Sbjct: 378 NWEEFIAAAVSLNKIEREKHLMAA 401
>04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814
Length = 775
Score = 27.5 bits (58), Expect = 6.1
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 324 MSRRLEADDWARCVELNEKWNAEVALEREARRKHEIAAMEEYTMAR 461
+SRR D + + K+N + +R ARR H+ TM+R
Sbjct: 149 LSRRSGWDRRSNSFDSRRKYNDAASADRSARRSHDYDDQRRPTMSR 194
>09_01_0019 + 403078-404211
Length = 377
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +3
Query: 252 RAIRRFYHEDMIKEKSTKDSASSEMSRRLEADDWARCVELNEKWNAEVALEREARRKH 425
R+ +R ED ++E+ +KD +R E D + ++K + + +R+ RR H
Sbjct: 232 RSTKRSDTEDDLEEERSKDKKKKSRRKRHERSDEDSESDSDKKRHRKSRKDRKRRRSH 289
>07_03_1028 - 23378140-23378802
Length = 220
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +3
Query: 180 KRPVVSEDERLELMRLHNNYKTQMRAIRRFYHED----MIKEKSTKDSASSEMSRRL 338
+RP+ DERL + LH+ + R ++++D K K A++E + R+
Sbjct: 39 QRPICRGDERLPMPPLHSKRRRDEHHRRDYHYDDDDYAYRASKKKKQQAAAEQAARM 95
>04_01_0350 - 4610444-4610668,4612181-4612969
Length = 337
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -1
Query: 433 AISCFLLASRSKATSAFHFSFNSTHRAQSSASKRRDISELALSFVD 296
A+ C +ASR + S H + A+ R +S L L +VD
Sbjct: 81 AVRCGAVASRGELFVTTKLSMADAHPPRVVAALRESLSRLGLDYVD 126
>01_01_0455 - 3379727-3381058
Length = 443
Score = 27.1 bits (57), Expect = 8.1
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +3
Query: 306 DSASSEMSRRLEADDWARCVELNEKWNAEVALEREARRKHEIAA 437
D +E+ RL A AR WNAEV+L R H +AA
Sbjct: 27 DHVVTEVLVRLPARSLARLRCTCRSWNAEVSLPGFQDRHHALAA 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,272,808
Number of Sequences: 37544
Number of extensions: 238303
Number of successful extensions: 750
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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