Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_C15
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier Hub1|Schi...    29   0.53 
SPAC806.05 |||DUF1763 family protein|Schizosaccharomyces pombe|c...    28   1.2  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    27   2.1  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    25   6.5  
SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein...    25   8.7  

>SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier
           Hub1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 73

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 555 PGDRTRDLRTAVVCNTTALPRQLMNTTWYIVIFQKNT*LSTFKFHD 418
           P D   D +  V   T   PR+++   W+ V F+ N  L+ ++ HD
Sbjct: 20  PDDTVGDFKKLVAAQTGTDPRRIVLKKWHSV-FKDNITLADYEIHD 64


>SPAC806.05 |||DUF1763 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 125

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 287 EHVMRLRQIWRKGL-VVLTARFIKNRAVISQAYKYG 391
           EH    RQ+WR G+   ++ RF  +R VI    + G
Sbjct: 4   EHASAFRQLWRAGMAAAISTRFPGHRFVIRDLLRNG 39


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +3

Query: 213 IMRYLFDNNPHLLKSNNYIKFFNHSSMSCDY 305
           I++ L +N+PH++K  +++K  +H  +  DY
Sbjct: 549 ILKGLGNNHPHIVKYLDFVKTKHHFGIVLDY 579


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 567 HLTRPGDRTRDLRTAVVCNTTA 502
           H + P D T  LRTA+VC+ ++
Sbjct: 83  HASEPVDETGLLRTAIVCDKSS 104


>SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein
           Mad3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 376 LGNDSSIFYEPSGQYYE 326
           +G +SSIFYE    Y+E
Sbjct: 145 IGQESSIFYEEYANYFE 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,378,429
Number of Sequences: 5004
Number of extensions: 48416
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)