Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_C15
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0204 - 15150854-15151147,15152230-15153689,15154055-151542...    28   6.7  
03_01_0440 - 3414811-3415884,3416000-3416037,3416807-3416966           27   8.8  

>07_03_0204 -
           15150854-15151147,15152230-15153689,15154055-15154266,
           15155123-15155275,15155569-15155630,15155733-15155785,
           15156380-15156452,15156499-15156619,15156699-15156878,
           15157333-15157391
          Length = 888

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -2

Query: 424 PRRKKKAANHAPVFIRLGNDSSIFYEPSGQYYEP 323
           P RKK   N A   +  G DS   YE  G  ++P
Sbjct: 516 PSRKKNNVNTADPILLAGGDSGDVYEQRGAGFDP 549


>03_01_0440 - 3414811-3415884,3416000-3416037,3416807-3416966
          Length = 423

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +1

Query: 424 ELERGKSRIFLKYHNIPRGV 483
           EL  G SR F +Y NIP+GV
Sbjct: 391 ELTTGNSRQFREYKNIPQGV 410


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,970,948
Number of Sequences: 37544
Number of extensions: 266865
Number of successful extensions: 523
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)