Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_C14
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|c...    27   3.2  
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    26   4.2  
SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyce...    26   4.2  
SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual       25   9.8  

>SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 449

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -1

Query: 510 KYYKLPWKIISS*IKSEMNWWRRKKTLKTTEEENLFFF 397
           K Y LP+K++ S +   M W   ++ L   E +++  F
Sbjct: 360 KKYALPYKVLDSLVFYFMRWKSLERPLAVLEHQSMLVF 397


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -1

Query: 522 HKEVKY--YKLPWKIISS*IKSEMNWWRRKKTLKTTEEENLFFFCGHIFSWL 373
           HKE ++  Y +PW   +S I + + +   K   K  E   L FF G IF ++
Sbjct: 300 HKEWRFIIYSIPWFNAASAIGASLCFNASKFGKKIFEILRLMFFSGIIFGFI 351


>SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 138

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -3

Query: 544 TFLKVTGT*GSKIL*ITMENNLVINKERNELVEKEENFKN 425
           T+ +V G   +++L   + N +  +KE+  L +KE+ F+N
Sbjct: 71  TYSQVRGPKAARVLSEILRNRITESKEKLSLSQKEKLFQN 110


>SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -2

Query: 335 DPITVFLNVKSHVFIDNLDPF 273
           DP  VFLNV +H   D   PF
Sbjct: 69  DPSIVFLNVSNHASPDEKVPF 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,345,602
Number of Sequences: 5004
Number of extensions: 42141
Number of successful extensions: 81
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)