Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_C13
(701 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch... 29 0.64
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c... 29 0.64
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 29 0.85
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 26 4.5
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 26 4.5
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 4.5
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr... 26 4.5
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 26 6.0
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 26 6.0
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 26 6.0
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 26 6.0
SPBC25H2.08c |mrs2||magnesium ion transporter Mrs2|Schizosacchar... 25 7.9
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 25 7.9
>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 29.1 bits (62), Expect = 0.64
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -3
Query: 267 CILGFTLSACFISRTRAVKPSLCSD-SLSSTGVVPNVFLMLCQKDPEHIPINY 112
CI GF ++ + +RTR + PS SLSS V + + +IPI +
Sbjct: 325 CIAGFVVNELYTTRTRIIAPSAFQTLSLSSVMVTSFLHYYIMSTVTYYIPIYF 377
>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 29.1 bits (62), Expect = 0.64
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -3
Query: 267 CILGFTLSACFISRTRAVKPSLCSDSLSSTGVVPNVFL 154
CI GF ++ + +RTR + PS +LS T V+ FL
Sbjct: 325 CIAGFVVNEFYTTRTRIITPS-AFKTLSLTSVMVTSFL 361
>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 28.7 bits (61), Expect = 0.85
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = -1
Query: 437 RGSAVRKSVQCS---PPLWGYVQVYNSQMP 357
+G ++ KS CS PPL G+V V+N Q P
Sbjct: 256 KGKSIIKSQNCSDGLPPLPGFVVVFNLQSP 285
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -3
Query: 126 IPINYPLHSRFTSTESNIRTASKNRNISRNKFVLIWKIS*TK 1
+ I Y + ++R AS N N++ NK IW S T+
Sbjct: 216 VAITYRNGQALSYYNGSVRQASMNNNVNNNKSKDIWSSSNTE 257
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 26.2 bits (55), Expect = 4.5
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Frame = +2
Query: 185 DKESEHREG---FTALVRE--MKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDIV 349
D ES H EG F + E MK+ALN ++ +S ++ I FD I D V
Sbjct: 985 DYESHHGEGNVHFNVTLTEAGMKEALNESLEVKFKLSRTQATSNMIAFDASGRIKKYDSV 1044
Query: 350 NIQAFDYY 373
++Y
Sbjct: 1045 EDILTEFY 1052
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +3
Query: 495 PTNLSL-VSAPLDVRGSSIQTVKFPEFHRYT 584
PT L SA DVR +S + +FH+Y+
Sbjct: 51 PTELKARTSATFDVRSASTSPINASDFHKYS 81
>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 537
Score = 26.2 bits (55), Expect = 4.5
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = -3
Query: 174 VVPNVFLMLCQKDPEHIP-INYPLHSRFTSTES-NIRTASKNRN-ISRNKFVL 25
+V F++LC PE +P IN +S T ++ + T +K ++ + R KFVL
Sbjct: 250 IVGGFFVILCVLCPETLPVINIMNYSSTTGEKTVQVSTLAKAKSAVVRTKFVL 302
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.8 bits (54), Expect = 6.0
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Frame = +2
Query: 509 LGISTTGRTWKLDSDSEISGVPPI------HADKGGEAGPYTXVQGLLSYPEIC 652
LG+S G+T+ L S+ GV + +A KG EA P T V+ L S E C
Sbjct: 93 LGVSGAGKTYTLFGPSDRPGVAFLALDALFYAIKGREASPQT-VEFLRSQLEKC 145
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +2
Query: 413 PIYAPQNRDPLQNADAAINYWIQNGAPTHKLVLGISTTGRTWK--LDSDSEIS 565
P PQ+ + +QN + + + G P K V+ + T DSDS++S
Sbjct: 777 PESPPQSYESIQNDNELLQELLSMGFPREKAVIALEATNYDVNEVSDSDSKLS 829
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +3
Query: 18 SKLKRIYFGL-CFYSSKLYEYL 80
+++K I FG CFY+ K+Y YL
Sbjct: 658 ARIKLIDFGSSCFYNEKVYTYL 679
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 349 DNVDQVYDAWDVKVNGAIYVWQ 284
D VD++YDAW N WQ
Sbjct: 54 DYVDEMYDAWKKDPNSVHASWQ 75
>SPBC25H2.08c |mrs2||magnesium ion transporter
Mrs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 422
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 45 LCFYSSKLYEYLTQLM*TLNVEDNLLEYVQDLSG--TASRKHSGLPLLMIRNQSIE 206
L +S +L +L + +V D LLE QDL+G R +G P + ++ +E
Sbjct: 234 LLIFSKRLSGFLKKATLIRDVLDELLEQDQDLAGMYLTERLKTGKPRDLDKHDEVE 289
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 25.4 bits (53), Expect = 7.9
Identities = 20/79 (25%), Positives = 42/79 (53%)
Frame = +3
Query: 57 SSKLYEYLTQLM*TLNVEDNLLEYVQDLSGTASRKHSGLPLLMIRNQSIEKASPLLYVR* 236
S +LY+ + ++ ++ LL+ + D + + LPL + + ++E AS L+ V
Sbjct: 488 SGQLYQKVIEMNDLDSIPSKLLQTLVDQIWSLLPGYCYLPLDLQSSFTLEFASILVNVLY 547
Query: 237 NKHSM*NPICS*LSAFCQT 293
+ S+ + IC+ L+A +T
Sbjct: 548 EQVSLRSVICNSLTALVET 566
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,043,799
Number of Sequences: 5004
Number of extensions: 66485
Number of successful extensions: 215
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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