Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_C13
(701 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0649 - 18402976-18403220,18403305-18404499 46 3e-05
11_04_0234 + 15187065-15188241,15188316-15188494 41 0.001
12_02_0237 - 16087083-16087201,16087531-16088341,16097713-16098156 33 0.29
12_02_0232 - 16015174-16015244,16015861-16016671,16018412-16018861 32 0.38
12_02_0239 - 16125105-16126025,16126966-16127415 31 1.2
12_02_0234 - 16043995-16044894,16050069-16050200,16050278-16050718 29 3.6
07_01_0365 + 2718707-2718839,2719335-2719405,2719512-2719955,272... 29 4.7
02_05_0272 - 27348537-27348728,27349035-27349192,27349292-273493... 28 6.2
02_05_0967 - 33148283-33148524,33148602-33148881,33148959-331491... 28 8.3
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 46.0 bits (104), Expect = 3e-05
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Frame = +2
Query: 314 DVPS--IINLVDIVNIQAFDYYTP-ERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQN 484
D PS + +D VN+ AF P N + AP+Y +R +A + W+
Sbjct: 215 DYPSETVARSLDWVNVMAFGLRPPGAANANATAFDAPLY---DRASHYSASYGVVSWLDA 271
Query: 485 GAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTXVQGLLSYPEI 649
G P K+V+GI GR+W L + + P+ A + G + G +SY E+
Sbjct: 272 GVPASKVVMGIPLYGRSWFLRNKANSGVGAPVVAAGPKQRG--SNATGAMSYAEV 324
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 40.7 bits (91), Expect = 0.001
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Frame = +2
Query: 296 NSSIYFDVPSIINLVDIVNIQAFDYYTPERNPKEADYTAPIYAPQNRDPLQNADAAINYW 475
++++ + + + + +D VNI F + N AD AP+Y ++D +A + W
Sbjct: 214 DTNLNYPIDDMSSSLDWVNIITFSLHK-NSNVTTAD--APLY---DKDSHFSASYGVISW 267
Query: 476 IQNGAPTHKLVLGISTTGRTWKL-DSDSEISGVPPIHADKGGEAGPYTXVQGLLSYPEI 649
+ G P KLV+GI GR+W L + D G P A G + G+++Y EI
Sbjct: 268 LDAGLPPCKLVMGIPLFGRSWFLRNKDKNGLGAPTAAA---GTKQRKSNQIGVIAYAEI 323
>12_02_0237 - 16087083-16087201,16087531-16088341,16097713-16098156
Length = 457
Score = 32.7 bits (71), Expect = 0.29
Identities = 22/85 (25%), Positives = 38/85 (44%)
Frame = +2
Query: 92 VNLECRG*FIGICSGSFWHSIKKTFGTTPVDDKESEHREGFTALVREMKQALNVKPNMQL 271
+N+ RG + SG + + + + T V+D + LVR+ K + ++ NMQL
Sbjct: 295 INVNARGRWKKFPSGYYGNGLMCSVIQTTVNDLCTNPLGHTIELVRKAKDEMMIEENMQL 354
Query: 272 VISVLPNVNSSIYFDVPSIINLVDI 346
+ +LP Y + I DI
Sbjct: 355 RVDLLPLWREKPYIKLQRIFETCDI 379
>12_02_0232 - 16015174-16015244,16015861-16016671,16018412-16018861
Length = 443
Score = 32.3 bits (70), Expect = 0.38
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 221 LVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDI 346
LVR+ K + K NMQL++ +LP Y V I DI
Sbjct: 340 LVRKAKHEMKTKENMQLMVDLLPLWREKPYIKVERIFETCDI 381
>12_02_0239 - 16125105-16126025,16126966-16127415
Length = 456
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/83 (25%), Positives = 35/83 (42%)
Frame = +2
Query: 98 LECRG*FIGICSGSFWHSIKKTFGTTPVDDKESEHREGFTALVREMKQALNVKPNMQLVI 277
+ RG + + G + + + T V + + E LVR+ K + + NMQL++
Sbjct: 299 INARGRWRKLPLGYYGNGLMYPIVETTVKELCTNPLEHTIELVRKAKHKIRTEENMQLMV 358
Query: 278 SVLPNVNSSIYFDVPSIINLVDI 346
V+P Y V I DI
Sbjct: 359 DVMPLWYEKPYIKVQRIFETCDI 381
>12_02_0234 - 16043995-16044894,16050069-16050200,16050278-16050718
Length = 490
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 221 LVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDI 346
LVR+ K + + NMQL + +LP Y V I DI
Sbjct: 381 LVRKAKDEMKTEENMQLRVDLLPLWREKPYIKVQRIFEACDI 422
>07_01_0365 +
2718707-2718839,2719335-2719405,2719512-2719955,
2720660-2721802
Length = 596
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +3
Query: 438 ILYKTPTLL*ITGFKMVRLPTNLSLVSAPLDVRGSSI 548
++Y +PT++ + GF + LSLV+A L+ GS +
Sbjct: 293 VMYYSPTIVQLAGFASNQTALALSLVTAGLNAAGSLV 329
>02_05_0272 -
27348537-27348728,27349035-27349192,27349292-27349323,
27349420-27349514,27349614-27349687,27349800-27349878,
27350015-27350078,27350156-27350218,27350300-27350442,
27350566-27350703,27350792-27350913,27350993-27351158,
27351276-27351398,27351609-27351680,27351773-27351880,
27352481-27352597,27352727-27352865,27352974-27353080,
27353167-27353276,27353892-27354025,27354106-27354255,
27354329-27354549,27354647-27355318
Length = 1092
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Frame = +2
Query: 176 PVDDKESEHREGFTALVREMKQALNV-KPN---MQLVISVLPNVNSSIYFDVPSI 328
P+ EH E AL ++A+N+ KP + L+I++LP+ N S+Y D+ I
Sbjct: 660 PLVTARPEHVE--RALKARYQEAMNILKPQGGELDLLIAILPDNNGSLYGDLKRI 712
>02_05_0967 -
33148283-33148524,33148602-33148881,33148959-33149151,
33149244-33149324,33149395-33149520,33149758-33150137,
33150367-33150394,33150816-33150979,33151920-33152039,
33152168-33152416
Length = 620
Score = 27.9 bits (59), Expect = 8.3
Identities = 8/30 (26%), Positives = 17/30 (56%)
Frame = -3
Query: 207 SLCSDSLSSTGVVPNVFLMLCQKDPEHIPI 118
S+C ++ + P + L++ QK H+P+
Sbjct: 371 SICDKNIQEIKISPGIMLVIYQKSANHVPL 400
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,915,055
Number of Sequences: 37544
Number of extensions: 407804
Number of successful extensions: 1122
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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