Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_C11
(454 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po... 146 1e-36
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch... 138 5e-34
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces... 63 2e-11
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 28 0.58
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos... 27 1.0
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 27 1.0
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ... 27 1.3
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 2.3
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom... 26 3.1
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|... 26 3.1
SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces pomb... 25 4.1
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 25 5.4
SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 7.2
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 25 7.2
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual 25 7.2
SPCC1393.09c |||RWD domain|Schizosaccharomyces pombe|chr 3|||Manual 25 7.2
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 25 7.2
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ... 24 9.5
SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import com... 24 9.5
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa... 24 9.5
>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 161
Score = 146 bits (354), Expect = 1e-36
Identities = 71/104 (68%), Positives = 87/104 (83%)
Frame = +3
Query: 111 PIYGPFFGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGIIAI 290
P+Y PFFGVMG +AI+F+S GAAYGTAK+G GI+AM V+RP+ I+K+ IPVVMAGIIAI
Sbjct: 7 PVYAPFFGVMGCTAAIVFASFGAAYGTAKAGVGISAMGVLRPDLIVKNTIPVVMAGIIAI 66
Query: 291 YGLVVAVLIAGSLDQPSNNYTLYHGFIHLGAGLAVGFSGLAAGF 422
YGLVV+VLI+G+L Q +LY GFI LGAGL+VG +GLAAGF
Sbjct: 67 YGLVVSVLISGNLKQ---ILSLYSGFIQLGAGLSVGLAGLAAGF 107
Score = 28.3 bits (60), Expect = 0.58
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1
Query: 418 GFAIGIVGDAGV 453
GFAIGIVGDAGV
Sbjct: 106 GFAIGIVGDAGV 117
>SPAC732.01 |vma11||V-type ATPase proteolipid
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 138 bits (333), Expect = 5e-34
Identities = 63/104 (60%), Positives = 82/104 (78%)
Frame = +3
Query: 111 PIYGPFFGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGIIAI 290
PIY FFG G ++++FS LGA YGTA +G GIAA+ RPE +MKS+IPVVM+GII +
Sbjct: 7 PIYSSFFGFAGVCASMVFSCLGAGYGTALAGRGIAAVGAFRPEIVMKSLIPVVMSGIIGV 66
Query: 291 YGLVVAVLIAGSLDQPSNNYTLYHGFIHLGAGLAVGFSGLAAGF 422
YGLV++VLIAG + P N+Y+L+ GFIHL AGLAVG +G+AAG+
Sbjct: 67 YGLVMSVLIAGDM-SPDNDYSLFSGFIHLSAGLAVGLTGVAAGY 109
Score = 24.6 bits (51), Expect = 7.2
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +1
Query: 418 GFAIGIVGDAGV 453
G+AIG+VGD GV
Sbjct: 108 GYAIGVVGDRGV 119
>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 199
Score = 62.9 bits (146), Expect = 2e-11
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Frame = +3
Query: 129 FGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGIIAIYGLVVA 308
+G++G AS + F +GAA+G GT I AV P K++I ++ ++AIY L++A
Sbjct: 45 WGLLGIASCVAFGIIGAAWGIFICGTSILGGAVKAPRIKTKNLISIIFCEVVAIYSLIIA 104
Query: 309 VLIAGSLD--QPSNNYT---LYHGFIHLGAGLAVGFSGLAAG 419
++ + ++ P+ YT Y GF G+ VG L G
Sbjct: 105 IVFSAKINDINPAGFYTKSHYYTGFALFWGGITVGLCNLICG 146
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 28.3 bits (60), Expect = 0.58
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 114 LDFRPFFLNVGVFTGPKNSDDYLHTL 37
+DF P V TGP N+DDY+H +
Sbjct: 357 MDF-PNITQVVQITGPSNTDDYIHRI 381
>SPAC212.04c |||S. pombe specific DUF999 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 288
Score = 27.5 bits (58), Expect = 1.0
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +3
Query: 255 IIPVVMAGIIAIYGLVVAVLIAGSLDQPSNNYTLYHGFIHLGAGLAVGFSGLAAG 419
II +AG+IA + +++ IAG + H ++ LA GF + +G
Sbjct: 193 IITATIAGVIAAFSVIITATIAGVIAAMVGILYFGHWLVYKILILAFGFKIVTSG 247
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 27.5 bits (58), Expect = 1.0
Identities = 16/80 (20%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = +3
Query: 126 FFG-VMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMR-PEQIMKSIIPVVMAGIIAIYGL 299
F+G ++G + F+ + + ++ G + I+ S+ P+V++ IIA +
Sbjct: 1439 FYGEILGPLGTLFFTCIPFLFINSQPGNDDETQSTNAFIRLIIMSVAPLVLSAIIAFFFF 1498
Query: 300 VVAVLIAGSLDQPSNNYTLY 359
+ +++ L S Y +Y
Sbjct: 1499 CLGIMLRPILGDRSKTYGVY 1518
>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 27.1 bits (57), Expect = 1.3
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = +3
Query: 114 IYGPFFGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVMRPEQIMKSIIPVVMAGIIAIY 293
+YGPF+ A+ FS+ Y +G G + ++ K +I A II Y
Sbjct: 87 LYGPFWITTTVIQALFFSNSITEYARYATGHGTSGYSI-------KKLISA--ASIIYGY 137
Query: 294 GLVVAVLIAGSL 329
++AVL+ G L
Sbjct: 138 TTIIAVLLWGIL 149
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.2 bits (55), Expect = 2.3
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = -3
Query: 428 MAKPGR*TRETYGETSTQVNEPVIQGVVIAGLV*GTCNQDSYDQS-VDGNDTRHDNGNDG 252
+ +PG + T GE + + P +A T S+ Q+ + GN +D N+G
Sbjct: 879 VTQPGSSSLPTSGEEANIIRSPGF--TPLAAQKDATIYTPSHAQATLYGNMDNNDRDNEG 936
Query: 251 FHDLLR 234
HD+L+
Sbjct: 937 IHDILQ 942
>SPAC1805.16c |||purine nucleoside phosphorylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 25.8 bits (54), Expect = 3.1
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 417 RPLDQRNLRRDQHPSE*TRDTGCSYCWAGLGNLQSGQLRPV 295
+ L+ R +Q P E ++ C +GLG L SG PV
Sbjct: 22 KALEAREYIIEQVPEELSKPKVAIICGSGLGTLASGLSAPV 62
>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 25.8 bits (54), Expect = 3.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 22 VVSWSECVQIVIRVFGTCKYSHIQEKWPK 108
V S V I + F + SH+QEKW K
Sbjct: 96 VFSLIAVVLITVMGFAMLRVSHLQEKWRK 124
>SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 287
Score = 25.4 bits (53), Expect = 4.1
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +1
Query: 85 HIQEKWPKIQSMDLSLELWGRRLPSSSAPLVLHMAQPSQAPVLPP 219
HI WP+ QS D E G L + A + + + ++ +L P
Sbjct: 62 HIATLWPETQSSDQENEEEGEELEDAVAKEINSLQKKNKKELLTP 106
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 25.0 bits (52), Expect = 5.4
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -2
Query: 126 KVHRLDFRPFFLNVGVFTGPKNSDDYLHTLTPRNYFSTDK 7
KV +D + FL PKN +DY++ L + D+
Sbjct: 249 KVQNVDQKSGFLTSSETDVPKNINDYIYLLIDDRFVPPDR 288
>SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 104
Score = 24.6 bits (51), Expect = 7.2
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +2
Query: 77 NTPTFKKNGRKSNLWTFLWSYGGGVCHHLQLPWCCIWHSQVR 202
++PT + + W S+G VC H++ CC ++S+++
Sbjct: 32 DSPTTVHHDERKESWR---SHGFIVCLHIRCCICCKYNSKIK 70
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 24.6 bits (51), Expect = 7.2
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = -1
Query: 256 MDFMICSGRITAMAAIPVPDLAVPYAAPREL 164
++ ++ +G ++ +P+ DLA Y A R++
Sbjct: 283 LEAIVATGAKVVLSKLPIGDLATQYFADRDI 313
>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 478
Score = 24.6 bits (51), Expect = 7.2
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = -2
Query: 237 QAASPPWRQYRCLTWL 190
Q ++PPW C +WL
Sbjct: 448 QGSAPPWHYIPCQSWL 463
>SPCC1393.09c |||RWD domain|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 24.6 bits (51), Expect = 7.2
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = -2
Query: 453 YACITDDAYGETRPLDQRNLRRDQHPS 373
+ CI D + T+P+D+ D PS
Sbjct: 20 FKCINDSTFEITQPIDREESNCDNPPS 46
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 24.6 bits (51), Expect = 7.2
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 53 SSEFLGPVNTPTFKKNG 103
SS +L P +P FKKNG
Sbjct: 169 SSGYLHPKTSPIFKKNG 185
>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 571
Score = 24.2 bits (50), Expect = 9.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 136 LWGRRLPSSSAPLVLHMAQPSQAPVLPP 219
++ + LP SSAP + A Q P+ PP
Sbjct: 208 IYNQCLPDSSAPTIDFPALFMQGPLAPP 235
>SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import
complex anchor subunit Tim18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 186
Score = 24.2 bits (50), Expect = 9.5
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +2
Query: 254 HHSRCHGGYH 283
HHS+ HG YH
Sbjct: 78 HHSKLHGSYH 87
>SPAC1B9.02c |sck1||serine/threonine protein kinase
Sck1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 696
Score = 24.2 bits (50), Expect = 9.5
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +1
Query: 79 YSHIQEKWPKIQSMDLSLELWG 144
+ ++QE W K++ +DL+ L G
Sbjct: 260 HEYVQEAWYKLEPLDLTKSLEG 281
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,231,351
Number of Sequences: 5004
Number of extensions: 51892
Number of successful extensions: 149
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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