Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_C08
(541 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|c... 83 3e-17
SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|c... 79 3e-16
SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomy... 63 2e-11
SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyc... 41 1e-04
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 33 0.020
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 28 1.0
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 2.3
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 2.3
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 27 2.3
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 26 3.1
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 26 3.1
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 26 3.1
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 26 3.1
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 26 3.1
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 26 3.1
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 26 3.1
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 26 3.1
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p... 26 4.1
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c... 25 7.2
>SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 110
Score = 82.6 bits (195), Expect = 3e-17
Identities = 39/92 (42%), Positives = 55/92 (59%)
Frame = +1
Query: 7 FIKEAILKDKVVVFSKSYCPYCKLAKDVFQKVKQPIKVIELDERDDGNIIQDNLSQITGF 186
F+++AI + V VFSKS+CP+CK AK+ K P K ELD+ ++G+ IQ L + T
Sbjct: 8 FVEKAISNNPVTVFSKSFCPFCKAAKNTLTKYSAPYKAYELDKIENGSDIQAYLHEKTKQ 67
Query: 187 RTVPQVFINGNCVGGGSDVKDLYQSGKLEPML 282
TVP +F +GG SD+ L SG L M+
Sbjct: 68 STVPSIFFRNQFIGGNSDLNKLRSSGTLTKMI 99
>SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 79.4 bits (187), Expect = 3e-16
Identities = 37/93 (39%), Positives = 58/93 (62%)
Frame = +1
Query: 1 QQFIKEAILKDKVVVFSKSYCPYCKLAKDVFQKVKQPIKVIELDERDDGNIIQDNLSQIT 180
+ F+ A+ + VVVF+KSYCPYC + V K +V ++D ++G+ IQ L + T
Sbjct: 5 ESFVDSAVADNDVVVFAKSYCPYCHATEKVIADKKIKAQVYQIDLMNNGDEIQSYLLKKT 64
Query: 181 GFRTVPQVFINGNCVGGGSDVKDLYQSGKLEPM 279
G RTVP +FI+ VGG SD + L++ G+L+ +
Sbjct: 65 GQRTVPNIFIHQKHVGGNSDFQALFKKGELDSL 97
>SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 166
Score = 63.3 bits (147), Expect = 2e-11
Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Frame = +1
Query: 16 EAILKDKVVVFSKSYCPYCKLAKDVFQ---KVKQPIKVIELDERDDGNIIQDNLSQITGF 186
E L++ V++FS+ CPY AK + ++ P V+E+ + + ++D LS I+
Sbjct: 61 EVFLENPVIIFSRPGCPYSAAAKKLLTETLRLDPPAVVVEVTDYEHTQELRDWLSSISDI 120
Query: 187 RTVPQVFINGNCVGGGSDVKDLYQSGKLEPML 282
T+P +F+ G+ +GG V+ LYQ KL+ L
Sbjct: 121 STMPNIFVGGHSIGGSDSVRALYQEEKLQSTL 152
>SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 146
Score = 41.1 bits (92), Expect = 1e-04
Identities = 24/101 (23%), Positives = 55/101 (54%), Gaps = 7/101 (6%)
Frame = +1
Query: 1 QQFIKEAILKDKVVVFSKSYC--PYCKLAKDVFQKVKQPIKVIELDERDDGNII-----Q 159
+Q +++A+ +D +V+F K P C + Q + ++ + D+ N++ +
Sbjct: 26 RQALEQAVKEDPIVLFMKGTPTRPMCGFSLKAIQILS--LENVASDKLVTYNVLSNDELR 83
Query: 160 DNLSQITGFRTVPQVFINGNCVGGGSDVKDLYQSGKLEPML 282
+ + + + + T+PQ++ING VGG + +++SG+L +L
Sbjct: 84 EGIKEFSDWPTIPQLYINGEFVGGSDILASMHKSGELHKIL 124
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 33.5 bits (73), Expect = 0.020
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = +1
Query: 154 IQDNLSQITGFRTVPQVFINGNCVGGGSDVKDLYQSGKLEPML 282
++ L + + T PQ++I G VGG V ++ ++G+L+ ML
Sbjct: 200 VRQGLKVFSDWPTFPQLYIKGEFVGGLDIVSEMIENGELQEML 242
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 27.9 bits (59), Expect = 1.0
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Frame = +1
Query: 37 VVVFSKSYCPYCKLAKDVFQKVKQ------PIKVIELDERDDGNIIQDNLSQITGFRTVP 198
+VVF +C YCK +QK+ P+ ++ D D N + Q+ GF T+
Sbjct: 52 LVVFYAPWCGYCKKLVPTYQKLASNLHSLLPVTAVDCDA--DQNRAVCSQYQVQGFPTIK 109
Query: 199 QVF 207
V+
Sbjct: 110 LVY 112
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 31 DKVVVFSKSYCPYCKLAKDVFQKVKQPIKVI 123
D +++ SKS + K KDV QK+K +I
Sbjct: 566 DNILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 31 DKVVVFSKSYCPYCKLAKDVFQKVKQPIKVI 123
D +++ SKS + K KDV QK+K +I
Sbjct: 566 DNILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 31 DKVVVFSKSYCPYCKLAKDVFQKVKQPIKVI 123
D +++ SKS + K KDV QK+K +I
Sbjct: 566 DNILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 31 DKVVVFSKSYCPYCKLAKDVFQKVKQPIKVI 123
D +++ SKS + K KDV QK+K +I
Sbjct: 566 DDILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 31 DKVVVFSKSYCPYCKLAKDVFQKVKQPIKVI 123
D +++ SKS + K KDV QK+K +I
Sbjct: 566 DDILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 31 DKVVVFSKSYCPYCKLAKDVFQKVKQPIKVI 123
D +++ SKS + K KDV QK+K +I
Sbjct: 566 DDILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 31 DKVVVFSKSYCPYCKLAKDVFQKVKQPIKVI 123
D +++ SKS + K KDV QK+K +I
Sbjct: 566 DDILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 31 DKVVVFSKSYCPYCKLAKDVFQKVKQPIKVI 123
D +++ SKS + K KDV QK+K +I
Sbjct: 566 DDILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 31 DKVVVFSKSYCPYCKLAKDVFQKVKQPIKVI 123
D +++ SKS + K KDV QK+K +I
Sbjct: 566 DDILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 31 DKVVVFSKSYCPYCKLAKDVFQKVKQPIKVI 123
D +++ SKS + K KDV QK+K +I
Sbjct: 566 DDILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 31 DKVVVFSKSYCPYCKLAKDVFQKVKQPIKVI 123
D +++ SKS + K KDV QK+K +I
Sbjct: 566 DDILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 4.1
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -3
Query: 251 KSLTSEPPPTQLPLMNT*GTVLKPVICDRLS*IMFPSS 138
++LT+ PP Q+PLM V V+ RLS + P S
Sbjct: 276 RTLTTASPPEQIPLMEPQVYVNPQVLPGRLSSLSKPVS 313
>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 959
Score = 25.0 bits (52), Expect = 7.2
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +1
Query: 73 KLAKDVFQKVKQPIKVIELDERDDGNIIQDNLS 171
KL D K PI + L E N+IQDNLS
Sbjct: 635 KLRFDFSYKSSIPIDKLLLVENYCNNVIQDNLS 667
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,696,578
Number of Sequences: 5004
Number of extensions: 29158
Number of successful extensions: 97
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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