Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_C07
         (405 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    27   1.1  
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po...    27   1.5  
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar...    26   1.9  
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    25   3.4  
SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual        25   4.5  
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo...    25   5.9  
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb...    25   5.9  
SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces p...    24   7.8  

>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 230  SVVACKDNEFKSCGYRYDEKLVNNEIQDLEIEMTTYRIQYNTTL 361
            S +  K  + K+  Y   E L+ + + DL+ + T+   QYN +L
Sbjct: 896  STLEAKFTQQKNTSYSEREALLESSLSDLQSKHTSLESQYNYSL 939


>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
 Frame = +2

Query: 215 GIASCSVVAC-KDNEFKSCGYRYDEKLVNNEIQDLEIEMTTYRIQYNTTLECDNIVYFPL 391
           G  +C+   C + N   SCG   D  L  +  ++  +E    R+  N  L CD       
Sbjct: 243 GATNCNEGGCPRCNSASSCGKELDTCLCLHAEENALLEAGRERVGNNAILYCDTCPCLTC 302

Query: 392 SVR 400
           SV+
Sbjct: 303 SVK 305


>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +2

Query: 218 IASCSVVACKDNEFKSCGYRYDEKLVNN 301
           + +C V  C+  +   CG  Y++  +NN
Sbjct: 116 VVACDVCLCEYTDHGHCGLLYEDGTINN 143


>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +2

Query: 38  SLVSHISRPLVQGSQEFTLVDKDVSCHFKIRLNQAGGDTFPYYRAIV 178
           +L S ++ P+V+  ++ T  DK      KI +  +GGD+ P   A+V
Sbjct: 168 NLESGLATPVVETLKKATTSDKPAGVKKKIAVMTSGGDS-PGMNAVV 213


>SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
 Frame = +2

Query: 134 NQAGGDTFPYYRAIVHDGTNTYARREIG----IASCSVVACKDNEFKSCGYRYDE 286
           N   G  FP    +  DG   Y     G    IASCS +  + N++     +YD+
Sbjct: 137 NHRPGTLFPRVIVMKGDGHTPYDYENDGKANEIASCSALNVRGNDYNLGKLKYDK 191


>SPAC3A12.17c |cys12|cys1b|cysteine synthase
           Cys12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 125 IRLNQAGGDTFPYYRAIVHDGTNTYARREIGIASCSV 235
           IR  +  GD  PY    V++GT       I +  CS+
Sbjct: 91  IRTAEENGDLVPYQSNAVYEGTAGSTGISIAMLCCSL 127


>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 351

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 239 ACKDNEFKSCGYRYDEKLVN 298
           AC DN    CGY   E L N
Sbjct: 54  ACGDNRKGQCGYEVKEPLYN 73


>SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 340

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 32  DPSLVSHISRPLVQGSQEFTLV 97
           DPS V  ++ PL+ GSQ  T +
Sbjct: 71  DPSRVGKVANPLLNGSQLDTTI 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,614,714
Number of Sequences: 5004
Number of extensions: 31404
Number of successful extensions: 93
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)