Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_C07
(405 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_02_0034 + 5856165-5856183,5858845-5859173,5859275-5859277,585... 31 0.46
03_03_0186 + 15243150-15243563,15243685-15243777,15244604-152446... 30 0.61
04_04_0491 - 25605560-25605684,25605826-25605928,25606026-256075... 28 2.4
06_03_1072 + 27365834-27365945,27366360-27366464,27366844-273669... 27 4.3
04_03_0927 + 20871487-20871903,20872667-20872812,20873204-208733... 27 4.3
02_02_0199 - 7710487-7710804,7710907-7711298,7711543-7711878,771... 27 4.3
10_08_0680 - 19846481-19846767,19847192-19847379,19847467-198476... 27 5.6
02_02_0188 + 7617838-7620231,7621856-7622071,7622167-7622328,762... 27 7.5
09_03_0057 + 11944973-11947159 26 9.9
>05_02_0034 + 5856165-5856183,5858845-5859173,5859275-5859277,
5859440-5859517,5859623-5860090,5860378-5860437,
5860442-5860666,5860791-5860952,5861502-5861870,
5861950-5863390,5863598-5863701,5863744-5863779,
5863780-5863977,5864275-5864538
Length = 1251
Score = 30.7 bits (66), Expect = 0.46
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
Frame = +2
Query: 14 GLRLITDPSLVSHIS-RPLVQGSQEFTLVDKDVSCHFKIRLNQAGGDTFPYYR------- 169
GL + + PS S+++ RP+ S +V V+ I+ + GD+
Sbjct: 791 GLPVSSSPSFSSNVATRPISTSSVSMKIVQGLVASKSCIQASSRTGDSRSLLGEHHNRSP 850
Query: 170 AIVHDGTNTYARREIGIASCSVVACKDNEFKSCGYRYDEKLV 295
A++HDGTN + E SC ++A D C D+ LV
Sbjct: 851 AMIHDGTNMKSSLESSNNSCRLIA-SDYNATPCHSSKDQVLV 891
>03_03_0186 + 15243150-15243563,15243685-15243777,15244604-15244666,
15245028-15245114,15245197-15245349,15245422-15245579,
15246458-15246692,15246782-15246892,15246942-15246968,
15247269-15248327,15248432-15248692,15249011-15249196,
15249642-15250793,15250886-15251236,15251343-15251738
Length = 1581
Score = 30.3 bits (65), Expect = 0.61
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 224 SCSVVACKDNEFKSCGYRYDEKLVNNEIQDLEIE 325
+C+ A K +F G++YD L+ Q LEIE
Sbjct: 1116 TCTHAALKRRDFLQLGFKYDNLLMEESAQILEIE 1149
>04_04_0491 - 25605560-25605684,25605826-25605928,25606026-25607592,
25608694-25610198
Length = 1099
Score = 28.3 bits (60), Expect = 2.4
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = +2
Query: 140 AGGDTFPYYRAIVHDG--TNTYARREIGIASCSVVACKDNEFKSCGYRYDEKLVNNEI 307
+G + P+ V D T T+ R I C+VVAC D F E+ + N +
Sbjct: 1008 SGCEVLPFQNPSVQDSQKTWTFLRCAGQILECNVVACTDLTFGQTNVHSSEEEIGNGV 1065
>06_03_1072 +
27365834-27365945,27366360-27366464,27366844-27366929,
27367445-27367631,27368031-27368142,27368235-27368337,
27368424-27368469,27368670-27368708,27368803-27368959,
27369031-27369133,27369337-27369453,27369880-27369957,
27370044-27370145,27370252-27370345,27370432-27370542,
27370643-27370707,27370949-27371097,27371349-27371581,
27371778-27371908,27372016-27372126,27372210-27372326
Length = 785
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 182 DGTNTYARREIGIASCSVVACKDNEFKSCGY 274
D NT+ IG C++V C ++++SC Y
Sbjct: 597 DRVNTWFSEAIG-RPCTLVRCSSSKYRSCTY 626
>04_03_0927 +
20871487-20871903,20872667-20872812,20873204-20873301,
20873378-20873572,20873670-20873797,20873892-20874050,
20875119-20875223,20875449-20875559,20875653-20875790,
20875909-20876091,20876362-20876517,20876615-20876738,
20876820-20877030,20877614-20877729,20877828-20878053,
20878218-20878311,20879198-20879275,20879822-20879971,
20880086-20880292,20880584-20880788,20880990-20881096
Length = 1117
Score = 27.5 bits (58), Expect = 4.3
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 5 DHDGLRLITDPSLVSHISRPLVQG 76
D+ LRLITD S+ S +SR QG
Sbjct: 191 DNKSLRLITDASVSSPVSREKAQG 214
>02_02_0199 -
7710487-7710804,7710907-7711298,7711543-7711878,
7711971-7711996,7712466-7712525,7712625-7712696,
7712784-7712927,7714165-7714236,7714350-7714482,
7714572-7714680
Length = 553
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -1
Query: 93 NVNSWDPCTKGLLMCDTKDGSVINLR 16
++NS DPCT ++ C + DG V++L+
Sbjct: 58 DINSVDPCTWSMVAC-SPDGFVVSLQ 82
>10_08_0680 -
19846481-19846767,19847192-19847379,19847467-19847666,
19847799-19848060,19848652-19848758
Length = 347
Score = 27.1 bits (57), Expect = 5.6
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 131 LNQAGGDTFPYYRAIVHDGTNTYARREIGIASCSV 235
L + GD P YRA V + T + RE + C V
Sbjct: 24 LGASEGDADPLYRACVDECEKTGSLRETSVRHCQV 58
>02_02_0188 + 7617838-7620231,7621856-7622071,7622167-7622328,
7622466-7622516,7622936-7623070,7623161-7623184,
7623341-7623452,7623776-7623901,7624004-7624053,
7624339-7624497,7624582-7624677,7624751-7624866,
7624907-7624984,7624985-7625108,7625193-7625306,
7625423-7625503,7625616-7625756,7625834-7625848
Length = 1397
Score = 26.6 bits (56), Expect = 7.5
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 35 PSLVSHISRPLVQGSQEFTLVDKDVSCHFKIRLNQAG 145
P + H +RP+V S T ++ + +C F + ++ AG
Sbjct: 1213 PRINEHCNRPIVWKSSRLTRINDNSTCRF-VHVSSAG 1248
>09_03_0057 + 11944973-11947159
Length = 728
Score = 26.2 bits (55), Expect = 9.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 218 IASCSVVACKDNEFKSCGYRYDEKLVNNEIQDLEIEMTT 334
IA+ V +CK + +S GY+Y E L++ + E T
Sbjct: 513 IAAGLVESCKGGKLESNGYQYFEDLLHRSLLQKESNSPT 551
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,304,922
Number of Sequences: 37544
Number of extensions: 195418
Number of successful extensions: 494
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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