Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_C06
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po...    31   0.22 
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi...    28   1.2  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    27   2.0  
SPAC9.02c |||N-acetyltransferase|Schizosaccharomyces pombe|chr 1...    26   6.2  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.2  
SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr...    25   8.2  

>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 1/129 (0%)
 Frame = +2

Query: 200 VCEINEHGEAICNCIKECPYETDSRRKVCTNFNETWSSDCEVYRQRCLCLDHSELCRRAQ 379
           VC+ N     + N      YE +S +    + N  W S   VY +     D  E C R Q
Sbjct: 95  VCD-NVGDHLVGNVYVRFKYE-ESAQNAIDDLNSRWYSQRPVYAELSPVTDFREACCR-Q 151

Query: 380 YHHVQIEYYGTCREMPECSENEMSDFPRRMRDWLFNIMRDLAERRELTPHYL-RMEREAE 556
           +   + +  G C  M     +     P+ +RD +      LA+R+ L  +    M++E  
Sbjct: 152 HETSECQRGGLCNFM-----HAKKPSPQLLRDLV------LAQRKYLALNAAEEMKKEPN 200

Query: 557 SNLTRRWTN 583
           S+ T RW +
Sbjct: 201 SDSTNRWVS 209


>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 308

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -2

Query: 131 VTHSGSRRHELSQP-PGIVSRPGSPPCRSRGAPTRRCPRGEA 9
           ++ S S  H  SQ  PG  S P  P   + G   ++CP  EA
Sbjct: 66  ISSSSSEPHHTSQSTPGETSSPVCPVSGAHGGADKKCPALEA 107


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 303 VSLKFVHTLRLESVSYGHSLMQLQIAS 223
           VS +F H LRL+ V+  H +   +IAS
Sbjct: 291 VSTRFSHELRLKPVAVAHGIKNSEIAS 317


>SPAC9.02c |||N-acetyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 165

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 18/70 (25%), Positives = 27/70 (38%)
 Frame = +2

Query: 23  DISESEHLENGMAESLDERRFQEAERARVSEILNESRDAPDNEINLDDPCMKVHCSAGRV 202
           +I   E  E      L+   F EAERA  + I +  + AP+ ++ L  P        G V
Sbjct: 3   NIRNIERSEVEEVSKLEAICFPEAERASFARIKDRVKRAPEIQLGLFAPTQHTSTLIGHV 62

Query: 203 CEINEHGEAI 232
                  E +
Sbjct: 63  LTSRTGSETV 72


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +2

Query: 185  CSAGRVCEINEHGEAICNCIKEC 253
            C+A R+C++ E       C+ +C
Sbjct: 974  CTASRICKVREIASLSLTCLLDC 996


>SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +2

Query: 155 NLDDPCMKVHCSAGRVCEINEHGEAICNCIKECPYETDSRRKVCTNFNE 301
           NL     K++   G +  +  HG  I  CIK+    +  + K  T FNE
Sbjct: 105 NLHKGAAKIYSMGGVIAAVC-HGPVILPCIKDSTGFSIVKGKTVTAFNE 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,719,187
Number of Sequences: 5004
Number of extensions: 54524
Number of successful extensions: 193
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)