Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_C05
         (340 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces...    26   1.8  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   4.2  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    24   5.5  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    24   5.5  
SPCC11E10.01 ||SPCC61.06|cystathionine beta-lyase |Schizosacchar...    23   9.6  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    23   9.6  

>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 287

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +1

Query: 142 RCGVNNGHLDSDYNVVGHRQLMATDSPGRKLYNIIRRW 255
           + GV   +LD D  ++ H+Q   T    R   + +  W
Sbjct: 168 KLGVQLSYLDGDAGIIAHKQTQETHERIRNWLSSLNSW 205


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 241 CYKVFDQGYQWPLVVCVLLRC 179
           CY  FD  Y +   + VLL C
Sbjct: 585 CYSFFDYNYTFSSALVVLLHC 605


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 100 QPTAEQIDALKSLLRCGVNNGHLDSDYNVVGHR 198
           QP     +   S +RC   N   D+ Y+ +GH+
Sbjct: 333 QPMPYPYNTWISTIRCNDCNSRCDTKYHFLGHK 365


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 13/56 (23%), Positives = 25/56 (44%)
 Frame = +1

Query: 13  SGWVHVSVPTHAYNRKALRITVIGNYNSHQPTAEQIDALKSLLRCGVNNGHLDSDY 180
           SGW + +  T+AY       T I +++    TA+    ++ ++  G   G  D  +
Sbjct: 519 SGWSNTNYDTYAYWHATNGQTGIASFSMGSLTADTYVPVRFVVANGAGKGGFDFSF 574


>SPCC11E10.01 ||SPCC61.06|cystathionine beta-lyase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +1

Query: 106 TAEQIDALKSLLRCGVNNGHLDSDYNVVG 192
           T+  + AL  +LRC  +N H+ + +++ G
Sbjct: 76  TSNGMSALDMILRCCKSNSHVVAGHDLYG 104


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 78  YRKLQLPPTNSRTNRRIEIST 140
           YR+++LPP  SR N   +IST
Sbjct: 340 YREIELPPFTSRINWH-DIST 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,447,076
Number of Sequences: 5004
Number of extensions: 26461
Number of successful extensions: 58
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)