Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_C05
         (340 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92849-7|CAB07432.1|  270|Caenorhabditis elegans Hypothetical pr...    27   2.6  
Z93374-3|CAB07558.2|  363|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z81592-1|CAB04725.1|  695|Caenorhabditis elegans Hypothetical pr...    27   3.4  
AF273815-1|AAG15164.1|  365|Caenorhabditis elegans nuclear recep...    27   3.4  
Z49128-8|CAA88960.2|  989|Caenorhabditis elegans Hypothetical pr...    27   4.5  
AL021171-6|CAA15960.2|  989|Caenorhabditis elegans Hypothetical ...    27   4.5  
U23524-8|AAC46826.1|  198|Caenorhabditis elegans Hypothetical pr...    26   6.0  
AC006769-1|AAF60590.2|  287|Caenorhabditis elegans Hypothetical ...    26   6.0  
AC006722-17|ABP57812.1|  141|Caenorhabditis elegans Hypothetical...    26   6.0  

>Z92849-7|CAB07432.1|  270|Caenorhabditis elegans Hypothetical
           protein H12D21.9 protein.
          Length = 270

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 301 TILLFIAVNIFRAIRATF*LCYKVFDQG-YQWPLVVCVLLRCS 176
           TIL+ + +    AI+        VF  G + W L++C+L+ C+
Sbjct: 101 TILICVLIAAASAIQLLIFSMIAVFYDGPFPWSLILCILMLCN 143


>Z93374-3|CAB07558.2|  363|Caenorhabditis elegans Hypothetical
           protein C06C6.4 protein.
          Length = 363

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 127 LKSLLRCGVNNGHLDSDYNVVGHRQ 201
           ++ LL C ++N H+  DY ++ H Q
Sbjct: 337 IEELLACELHNVHIHEDYRLILHEQ 361


>Z81592-1|CAB04725.1|  695|Caenorhabditis elegans Hypothetical
           protein T16G1.1 protein.
          Length = 695

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -2

Query: 117 LFCCWLVGVVISYNRDSKSFPVVRVSGHANVH-PTGSFIY 1
           +F CWL    +S    +K F  +       +H P+G+ +Y
Sbjct: 4   IFLCWLAIATVSQTVSAKKFMKIFADAGIGIHCPSGNKVY 43


>AF273815-1|AAG15164.1|  365|Caenorhabditis elegans nuclear receptor
           NHR-63 protein.
          Length = 365

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 127 LKSLLRCGVNNGHLDSDYNVVGHRQ 201
           ++ LL C ++N H+  DY ++ H Q
Sbjct: 339 IEELLACELHNVHIHEDYRLILHEQ 363


>Z49128-8|CAA88960.2|  989|Caenorhabditis elegans Hypothetical
           protein M03C11.8 protein.
          Length = 989

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 64  LRITVIGNYNSHQPTAEQIDALKSLLRCGVNNGHL 168
           +R+   GN  S    A+ +DA K+LL   +NNGHL
Sbjct: 13  VRVAHQGNPQSSSLQAD-MDAKKALLSQNLNNGHL 46


>AL021171-6|CAA15960.2|  989|Caenorhabditis elegans Hypothetical
           protein M03C11.8 protein.
          Length = 989

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 64  LRITVIGNYNSHQPTAEQIDALKSLLRCGVNNGHL 168
           +R+   GN  S    A+ +DA K+LL   +NNGHL
Sbjct: 13  VRVAHQGNPQSSSLQAD-MDAKKALLSQNLNNGHL 46


>U23524-8|AAC46826.1|  198|Caenorhabditis elegans Hypothetical
           protein C29F5.7 protein.
          Length = 198

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 181 NVVGHRQLMATDSPGRKLYNIIRRWPEWLGKC*QL*RVIW 300
           N +G  Q+   ++  +KL  +I+ WP  L +C +L   IW
Sbjct: 18  NGIGSAQVGPLNAKTKKL--VIQEWPRVLAQCPELFTEIW 55


>AC006769-1|AAF60590.2|  287|Caenorhabditis elegans Hypothetical
           protein Y45G12C.8 protein.
          Length = 287

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -1

Query: 334 IIYPSSSNRIVTILLFIAVNIFRAIRATF*LCYKVFDQGYQWPLV 200
           +++PSSS   +   L + ++I R I A    C+ +F + YQ  ++
Sbjct: 84  LVWPSSSTASIRSTLALLISISRVIAA----CFPIFFRRYQEKII 124


>AC006722-17|ABP57812.1|  141|Caenorhabditis elegans Hypothetical
           protein Y19D10A.17 protein.
          Length = 141

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -1

Query: 334 IIYPSSSNRIVTILLFIAVNIFRAIRATF*LCYKVFDQGYQWPLV 200
           +++PSSS   +   L + ++I R I A    C+ +F + YQ  ++
Sbjct: 84  LVWPSSSTASIRSTLALLISISRVIAA----CFPIFFRRYQEKII 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,128,379
Number of Sequences: 27780
Number of extensions: 154214
Number of successful extensions: 320
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)