Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_C05
         (340 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   2.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   2.3  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   4.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   4.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    20   9.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    20   9.4  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 316 SNRIVTILLFIAVNIF 269
           ++RIV  L F+A+N+F
Sbjct: 426 ASRIVFPLFFLAINVF 441


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 169 DSDYNVVGHRQLMATDSPGRKLYNIIRRWP 258
           DSDY    + + +   S  RKL NI+   P
Sbjct: 201 DSDYTDKSNEKKIPKSSGWRKLRNIVHWTP 230


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 25  HVSVPTHAYNRKALRITVIGNYNSHQPTAEQIDALK 132
           H+++      + A+RI +   Y+SH    E  + LK
Sbjct: 503 HITINADKPMKAAIRIFIGPKYDSHHKLIEIPEDLK 538


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 25  HVSVPTHAYNRKALRITVIGNYNSHQPTAEQIDALK 132
           H+++      + A+RI +   Y+SH    E  + LK
Sbjct: 503 HITINADKPMKAAIRIFIGPKYDSHHKLIEIPEDLK 538


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 6/35 (17%), Positives = 16/35 (45%)
 Frame = -2

Query: 105 WLVGVVISYNRDSKSFPVVRVSGHANVHPTGSFIY 1
           W+  +  S  ++     ++  + +  + P GS +Y
Sbjct: 116 WMPDLFFSNEKEGHFHNIIMPNVYIRIFPNGSVLY 150


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 6/35 (17%), Positives = 16/35 (45%)
 Frame = -2

Query: 105 WLVGVVISYNRDSKSFPVVRVSGHANVHPTGSFIY 1
           W+  +  S  ++     ++  + +  + P GS +Y
Sbjct: 116 WMPDLFFSNEKEGHFHNIIMPNVYIRIFPNGSVLY 150


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,989
Number of Sequences: 438
Number of extensions: 1829
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)