Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_C03
         (595 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547           29   2.1  
04_04_1060 - 30473509-30473619,30473815-30473850,30474063-304740...    27   8.5  

>01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547
          Length = 388

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = -1

Query: 229 RTFGTLQKHCGTSHSPDGGSISWTVGLSHDGSACCGQYNTECSPAGHFLIG 77
           ++F +L K CG  HSP  G ++  +  +   +A          P G F  G
Sbjct: 143 KSFASLPKDCGGGHSPRPGELAKAMSCAAAATATASAAGGMSVPCGVFFYG 193


>04_04_1060 -
           30473509-30473619,30473815-30473850,30474063-30474095,
           30474246-30474335,30474466-30475215
          Length = 339

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
 Frame = +1

Query: 85  ENARLVNTQCCTAHNKQSRHVTTLPSMRWTHHQGCATYRSA-----SATYRTFETLKPES 249
           ++AR   T CCT H   S+H+      + TH    A   ++     S  +R   T  P+ 
Sbjct: 27  DSARHKATNCCTRHGCSSKHLA--GKDKQTHRAATAAKEASETPRRSQIFRKPSTRTPQG 84

Query: 250 ASNCQNVKYN 279
           ++   N+  N
Sbjct: 85  STATDNISRN 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,791,784
Number of Sequences: 37544
Number of extensions: 235842
Number of successful extensions: 575
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)