Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_C01
(631 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0226 - 28515052-28515064,28515426-28515502,28515610-285157... 29 2.3
03_01_0429 - 3305676-3306131 29 2.3
07_03_0987 - 23155134-23155693,23155781-23157023 29 4.0
03_05_0705 - 26965352-26965542,26965732-26965763,26966141-269662... 29 4.0
08_01_0702 - 6205731-6206516,6207521-6207549,6208135-6208150 28 7.0
06_03_1488 + 30484904-30485134,30485239-30487159,30487255-304876... 28 7.0
05_07_0039 - 27239362-27239478,27240570-27241463 28 7.0
09_06_0017 - 20248672-20248783,20248982-20249229,20249314-202494... 27 9.3
09_04_0071 - 14313737-14315091,14316131-14316207,14316604-143167... 27 9.3
08_02_1475 - 27369088-27369199,27369404-27369651,27369734-273699... 27 9.3
01_01_1152 + 9170628-9171899 27 9.3
>05_07_0226 -
28515052-28515064,28515426-28515502,28515610-28515767,
28515852-28515937,28516048-28516351,28516410-28517490
Length = 572
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = -2
Query: 537 ELHAELVPDGRLRLQVVVFHSNTTVLRGAATRRP 436
E HAE+ PDGRLR+ VV S+ + AA P
Sbjct: 196 EAHAEVAPDGRLRM--VVCRSSVSRRSAAAAATP 227
>03_01_0429 - 3305676-3306131
Length = 151
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = -3
Query: 629 RRRVVPAGSSTATLRTSCR--NVCR--LSASRSGTSFTLNWYP 513
RRR+V GSS T R+ C + CR A + G SF L +YP
Sbjct: 95 RRRLVGPGSSPPTCRSRCGGCHPCRPVHVAIQPGRSFPLEYYP 137
>07_03_0987 - 23155134-23155693,23155781-23157023
Length = 600
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +1
Query: 103 LIAMDVHAHTSRGEVMGLTGGARAAPRLLTVWAYRPAAAAAGS 231
L+ + + A RGE GG + P LL+ +Y PAAAA S
Sbjct: 12 LLLLLLAAWCVRGEAEVANGGHQDLPPLLSFKSYNPAAAALES 54
>03_05_0705 -
26965352-26965542,26965732-26965763,26966141-26966235,
26966737-26966810,26966894-26967029,26967137-26967200,
26967285-26967350,26967445-26967587,26969314-26969407,
26969779-26969902,26970016-26970193,26970273-26970395,
26970884-26970955,26971032-26971139,26972511-26972627,
26972757-26972889,26973209-26973299,26974642-26974722,
26975342-26975421,26975500-26975705,26977417-26977893
Length = 894
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -3
Query: 476 RIQRYCEA-LRPVGQCCDVMNPRNGTWDRSSARWRLRCVAR 357
RI+R CE L + QCC N +N S W L+ + R
Sbjct: 557 RIKRLCETELGVITQCCLARNVQNVRQHNISETWHLKSMLR 597
>08_01_0702 - 6205731-6206516,6207521-6207549,6208135-6208150
Length = 276
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 85 RLHVSTLIAMDVHAHTSRGE-VMGLTGGARAAPRLLTVWAYRPAAAAA 225
+LH ST + MD H+H E ++G A A V P+AAAA
Sbjct: 19 QLHRSTSLEMDPHSHKKAHEGLIGDNPDAYAVTTYQPVLMVEPSAAAA 66
>06_03_1488 +
30484904-30485134,30485239-30487159,30487255-30487691,
30487777-30487983
Length = 931
Score = 27.9 bits (59), Expect = 7.0
Identities = 21/67 (31%), Positives = 27/67 (40%)
Frame = -3
Query: 203 YAHTVSXXXXXXXXXXXPITSPREVCACTSIAISVDTCNLTSYGAGFSVL*MRHCIKCIC 24
+A VS +TSPR S C+L SYG+ RHC+K +
Sbjct: 131 HAEEVSNLKLPSKLEMITVTSPR------SATFRQSKCSLISYGSSSVDYTYRHCLKKMR 184
Query: 23 CLRCRSR 3
R RSR
Sbjct: 185 PRRSRSR 191
>05_07_0039 - 27239362-27239478,27240570-27241463
Length = 336
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -3
Query: 410 NGTWDRSSARWRL-RCVARSRAEGELG 333
+G+WDRS W L C R++ EG G
Sbjct: 185 SGSWDRSVKVWNLTNCKLRTKLEGHNG 211
>09_06_0017 -
20248672-20248783,20248982-20249229,20249314-20249480,
20249916-20250079,20251275-20251555
Length = 323
Score = 27.5 bits (58), Expect = 9.3
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 347 EGELGNRGCEWCH 309
+G+ GN GC WCH
Sbjct: 297 KGKNGNDGCHWCH 309
>09_04_0071 -
14313737-14315091,14316131-14316207,14316604-14316725,
14316838-14316924,14317000-14317066,14317135-14317290,
14318689-14318837
Length = 670
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -2
Query: 537 ELHAELVPDGRLRLQVVVFHSNTTVLRGAATRRPVLRRDEPE 412
+L +LV G+ R+ +V +NT RG+A+R+ +R PE
Sbjct: 307 KLGLDLVSSGKHRVSSIVGSNNTKSSRGSASRKQ-RKRHSPE 347
>08_02_1475 -
27369088-27369199,27369404-27369651,27369734-27369900,
27370386-27370621,27371340-27371620
Length = 347
Score = 27.5 bits (58), Expect = 9.3
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 347 EGELGNRGCEWCH 309
+G+ GN GC WCH
Sbjct: 321 KGKNGNDGCHWCH 333
>01_01_1152 + 9170628-9171899
Length = 423
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -2
Query: 483 FHSNTTVLRGAATRRPVLRRDEPEERHLG--PEQRALEAPLR 364
FH+ +L G A R P + + P ERH+ P AL+ P +
Sbjct: 212 FHAPFHLLDGGAVRAPFMTTEIPFERHVAAFPGFTALKLPYK 253
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,377,637
Number of Sequences: 37544
Number of extensions: 242701
Number of successful extensions: 1021
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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