Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_B24
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S...    29   0.50 
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    28   1.2  
SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces pom...    27   1.5  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    27   1.5  
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    25   6.2  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    25   6.2  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   8.2  
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    25   8.2  

>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
           Vps33|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 29.1 bits (62), Expect = 0.50
 Identities = 28/101 (27%), Positives = 46/101 (45%)
 Frame = +2

Query: 26  FGYKYLYVFNNLIHAGLLVQPSSLKLGLNITNLGNLSERLPKWQNEFQITANKLKQLPSH 205
           +GY +L  F  LI AGLL     L+   NI+   +LS     W N + +  +++ +   +
Sbjct: 419 YGYYHLLTFQALIDAGLL----RLRQSTNISLQKSLS--YSTWLNTYPLVKDEVDE--QN 470

Query: 206 PEKVEKESPGYVFNGGYVPLIAVLCNAVLTSETLAEVLTKL 328
           PE +      Y ++ GY PL   +   +L      E + KL
Sbjct: 471 PEDI-----AYTYS-GYGPLSVHIAYDILKGRDNEEKILKL 505


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1000

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 19/65 (29%), Positives = 35/65 (53%)
 Frame = +2

Query: 191  QLPSHPEKVEKESPGYVFNGGYVPLIAVLCNAVLTSETLAEVLTKLSAVDNLKIGGIINE 370
            Q+P     V KES  + F G    L+  + +  +  +  +EVL ++  V + + G +I+E
Sbjct: 838  QIPGQVISVVKESIRHGFLGWSPRLMLAMYSCDV--QATSEVLGRVYGVVSKRRGRVIDE 895

Query: 371  KLKEG 385
            ++KEG
Sbjct: 896  EMKEG 900


>SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 152 WQNEFQITANKLKQLPSHPEKVEKES 229
           WQ++FQ   N +  LP  P+ +E+ S
Sbjct: 145 WQDDFQDAVNSVFGLPETPKTIEESS 170


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
            Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = +2

Query: 251  GYVPLIAVLCNAVLTSETLAEVLTKLSAVDNLKIGGI---INEKLKEGIETLNEKLWNLK 421
            GY+P   +    VLTS+    ++T +      + GG+   + E+ +   E+  +++++ K
Sbjct: 1070 GYLPDYVIYHELVLTSKEYMNIVTSVDPYWLAEFGGVYYSVKERFRNETESY-DRVFSSK 1128

Query: 422  PQND 433
            PQ D
Sbjct: 1129 PQLD 1132


>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 143 LPKWQNEFQITANKLKQLPSHPEKVEKESPGYVFNGGYVPLIAVLCNA 286
           +PK  N   I++  L  + SH E +E  +   ++     PL A +C+A
Sbjct: 411 IPKTPNFKFISSTLLALVSSHSEILEASTDRLIWTVHQGPLTATICHA 458


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 17/41 (41%), Positives = 19/41 (46%)
 Frame = -1

Query: 123 KFVIFKPNFRLDG*TNNPACIKLLNTYKYLYPNAIKYLLTN 1
           KFV F P   L G  +N   I  +    Y YPNA K  L N
Sbjct: 672 KFV-FPPPGILTGVRSNTRLILKMTNASYTYPNAKKKSLDN 711


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +2

Query: 281  NAVLTSETLAEVLTKLSAVDNLKIGGIINEKLKEGIETLNEKLWNLKPQNDL 436
            N V     ++E     S  +N  +   +N+  ++   +LNEKLW+   + DL
Sbjct: 3961 NGVTKDSVVSENENSDSEEENQDLDEEVNDIPEDLSNSLNEKLWDEPNEEDL 4012


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 583 TSQAANFAEINATDHVNQNAFG 518
           T + A    +  T+H+NQN+FG
Sbjct: 389 TGETALMRSVLVTNHLNQNSFG 410


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,368,592
Number of Sequences: 5004
Number of extensions: 46553
Number of successful extensions: 122
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)