Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_B24
         (588 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC016445-1|AAH16445.1|  617|Homo sapiens vacuolar protein sortin...    36   0.080
AK027754-1|BAB55345.1|  617|Homo sapiens protein ( Homo sapiens ...    36   0.080
AF308803-1|AAG34680.1|  617|Homo sapiens vacuolar protein sortin...    36   0.080
AL357472-1|CAB93109.1|  528|Homo sapiens VPS33B protein.               36   0.11 
AF201694-1|AAF91174.1|  617|Homo sapiens vacuolar protein sortin...    36   0.11 

>BC016445-1|AAH16445.1|  617|Homo sapiens vacuolar protein sorting
           33 homolog B (yeast) protein.
          Length = 617

 Score = 36.3 bits (80), Expect = 0.080
 Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 18/131 (13%)
 Frame = +2

Query: 2   LVNKYLIAFGYKYLYVFNNLIHAGLLVQPS--------SLKLGLNITN--LGNLSERLPK 151
           L  +YL ++G ++L  F+NL  AGLL + +          K+   +T+   G +++    
Sbjct: 418 LKTQYLQSYGPEHLLTFSNLRRAGLLTEQAPGDTLTAVESKVSKLVTDKAAGKITDAFSS 477

Query: 152 W--QNEFQITANKLKQLPSHPEKVEKESP---GYVFNGGYVPLIAVLCNAVLTSET---L 307
              ++ F+  + KL  +P    + + + P    YVF+G YVPL   +   VL   +   L
Sbjct: 478 LAKRSNFRAISKKLNLIPRVDGEYDLKVPRDMAYVFSGAYVPLSCRIIEQVLERRSWQGL 537

Query: 308 AEVLTKLSAVD 340
            EV+  L+  D
Sbjct: 538 DEVVRLLNCSD 548


>AK027754-1|BAB55345.1|  617|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14848 fis, clone PLACE1000492, highly similar to
           Rat vacuolar protein sorting homolog r-vps33b mRNA. ).
          Length = 617

 Score = 36.3 bits (80), Expect = 0.080
 Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 18/131 (13%)
 Frame = +2

Query: 2   LVNKYLIAFGYKYLYVFNNLIHAGLLVQPS--------SLKLGLNITN--LGNLSERLPK 151
           L  +YL ++G ++L  F+NL  AGLL + +          K+   +T+   G +++    
Sbjct: 418 LKTQYLQSYGPEHLLTFSNLRRAGLLTEQAPGDTLTAVESKVSKLVTDEAAGKITDAFSS 477

Query: 152 W--QNEFQITANKLKQLPSHPEKVEKESP---GYVFNGGYVPLIAVLCNAVLTSET---L 307
              ++ F+  + KL  +P    + + + P    YVF+G YVPL   +   VL   +   L
Sbjct: 478 LAKRSNFRAISKKLNLIPRVDGEYDLKVPRDMAYVFSGAYVPLSCRIIEQVLERRSWQGL 537

Query: 308 AEVLTKLSAVD 340
            EV+  L+  D
Sbjct: 538 DEVVRLLNCSD 548


>AF308803-1|AAG34680.1|  617|Homo sapiens vacuolar protein sorting
           protein 33B protein.
          Length = 617

 Score = 36.3 bits (80), Expect = 0.080
 Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 18/131 (13%)
 Frame = +2

Query: 2   LVNKYLIAFGYKYLYVFNNLIHAGLLVQPS--------SLKLGLNITN--LGNLSERLPK 151
           L  +YL ++G ++L  F+NL  AGLL + +          K+   +T+   G +++    
Sbjct: 418 LKTQYLQSYGPEHLLTFSNLRRAGLLTEQAPGDTLTAVESKVSKLVTDKAAGKITDAFSS 477

Query: 152 W--QNEFQITANKLKQLPSHPEKVEKESP---GYVFNGGYVPLIAVLCNAVLTSET---L 307
              ++ F+  + KL  +P    + + + P    YVF+G YVPL   +   VL   +   L
Sbjct: 478 LAKRSNFRAISKKLNLIPRVDGEYDLKVPRDMAYVFSGAYVPLSCRIIEQVLERRSWQGL 537

Query: 308 AEVLTKLSAVD 340
            EV+  L+  D
Sbjct: 538 DEVVRLLNCSD 548


>AL357472-1|CAB93109.1|  528|Homo sapiens VPS33B protein.
          Length = 528

 Score = 35.9 bits (79), Expect = 0.11
 Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 18/131 (13%)
 Frame = +2

Query: 2   LVNKYLIAFGYKYLYVFNNLIHAGLLVQPS--------SLKLGLNITN--LGNLSERLPK 151
           L  +YL ++G ++L  F+NL  AGLL + +          K+   +T+   G +++    
Sbjct: 329 LKTQYLQSYGPEHLLTFSNLRRAGLLTEQAPGDTLTAVESKVSKLVTDKAAGKITDAFSS 388

Query: 152 W--QNEFQITANKLKQLPSHPEKVEKESP---GYVFNGGYVPLIAVLCNAVLTSET---L 307
              ++ F+  + KL  +P    + + + P    YVF G YVPL   +   VL   +   L
Sbjct: 389 LAKRSNFRAISKKLNLIPRVDGEYDLKVPRDMAYVFGGAYVPLSCRIIEQVLERRSWQGL 448

Query: 308 AEVLTKLSAVD 340
            EV+  L+  D
Sbjct: 449 DEVVRLLNCSD 459


>AF201694-1|AAF91174.1|  617|Homo sapiens vacuolar protein sorting
           33B protein.
          Length = 617

 Score = 35.9 bits (79), Expect = 0.11
 Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 18/131 (13%)
 Frame = +2

Query: 2   LVNKYLIAFGYKYLYVFNNLIHAGLLVQPS--------SLKLGLNITN--LGNLSERLPK 151
           L  +YL ++G ++L  F+NL  AGLL + +          K+   +T+   G +++    
Sbjct: 418 LKTQYLQSYGPEHLLTFSNLRRAGLLTEQAPGDTLTAVESKVSKLVTDKAAGKITDAFSS 477

Query: 152 W--QNEFQITANKLKQLPSHPEKVEKESP---GYVFNGGYVPLIAVLCNAVLTSET---L 307
              ++ F+  + KL  +P    + + + P    YVF G YVPL   +   VL   +   L
Sbjct: 478 LAKRSNFRAISKKLNLIPRVDGEYDLKVPRDMAYVFGGAYVPLSCRIIEQVLERRSWQGL 537

Query: 308 AEVLTKLSAVD 340
            EV+  L+  D
Sbjct: 538 DEVVRLLNCSD 548


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,553,723
Number of Sequences: 237096
Number of extensions: 1452962
Number of successful extensions: 6420
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6414
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6155099854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)