Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_B24
         (588 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68014-4|CAA92026.2|  588|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF039044-11|AAG24131.1|  333|Caenorhabditis elegans Serpentine r...    28   5.7  
U50309-6|AAG24134.1|  247|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z81476-3|CAB03922.3|  592|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>Z68014-4|CAA92026.2|  588|Caenorhabditis elegans Hypothetical
           protein W04G3.4 protein.
          Length = 588

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
 Frame = +2

Query: 155 QNEFQITANKLKQLPSHP-EKVEKESPGYVFNGGYVPLIAVLCNAVLTSETLAEVLTKLS 331
           Q E  +T   L  L  +  EKV +    Y F    V LIA   N  LTS+ L   + KL 
Sbjct: 60  QEEAMLTIRALDYLVRNGGEKVHERCGRYKFLNELVRLIAPKYNGKLTSDALKTEIIKLL 119

Query: 332 AVDNLKIGGIINEKLKEGIETL 397
            +  L I  I   K K+  E+L
Sbjct: 120 FIWQLSIKHI--PKYKQVYESL 139


>AF039044-11|AAG24131.1|  333|Caenorhabditis elegans Serpentine
           receptor, class j protein37 protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = -1

Query: 228 DSFSTFSGCDGSCFNLFAVIWNSFC-HLGNLSLKFPKFV--IFKPNFRLD 88
           D F T+       F ++ V+W++ C +LG  +L+  +++   F+  +R+D
Sbjct: 126 DKFHTYMTISFGIFCVYFVVWHASCFYLGGANLEIKEYIRTDFRDFYRMD 175


>U50309-6|AAG24134.1|  247|Caenorhabditis elegans Hypothetical
           protein F58G4.3 protein.
          Length = 247

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 1/123 (0%)
 Frame = +2

Query: 77  LVQPSSLKLGLNITNLGNLSERLPKWQNEFQITANKLKQLPSHPEKVEKESPGYVFNGGY 256
           L+  SS  +GL    +G + E +          AN++ ++     K+ +  P        
Sbjct: 92  LLGNSSALVGLLTNFIGKIPEEVLPEVKSLLAKANEI-EIDELISKLNELVPQVKIGNLL 150

Query: 257 VPLIAVLCNAVLTS-ETLAEVLTKLSAVDNLKIGGIINEKLKEGIETLNEKLWNLKPQND 433
             LI+ +   +    + + +++ K+ AV   K+  II    K  IE  NE++  LK QN+
Sbjct: 151 KKLISEVSKLIKNLLKKVGKIIKKVGAVFE-KLTKIIKNTTKT-IEEKNEEIQKLKDQNE 208

Query: 434 LDF 442
           ++F
Sbjct: 209 IEF 211


>Z81476-3|CAB03922.3|  592|Caenorhabditis elegans Hypothetical
           protein C25F9.4 protein.
          Length = 592

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 146 PKWQNEFQITANKLKQLPSHPEKVEKES 229
           P W N+ Q   +K K++P  PE+  + S
Sbjct: 69  PSWTNKLQKLPSKCKKVPEVPEECSENS 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,764,884
Number of Sequences: 27780
Number of extensions: 247993
Number of successful extensions: 612
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)