Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_B24
         (588 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   2.9  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   3.9  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   5.1  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   5.1  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   5.1  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   6.8  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   9.0  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 252 PPLKTYPGDSFSTFSGCDG 196
           P L+ YP   + T   CDG
Sbjct: 226 PKLRPYPNWEWHTVGNCDG 244


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 252 PPLKTYPGDSFSTFSGCDG 196
           P L+ YP  SF+ +  C G
Sbjct: 108 PLLRPYPDWSFAKYEDCSG 126


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 252 PPLKTYPGDSFSTFSGCDG 196
           P L+ YP  SF+ +  C G
Sbjct: 102 PLLQPYPDWSFAKYDDCSG 120


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 252 PPLKTYPGDSFSTFSGCDG 196
           P L+ YP  SF+ +  C G
Sbjct: 102 PLLQPYPDWSFAKYDDCSG 120


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 252 PPLKTYPGDSFSTFSGCDG 196
           P L+ YP  SF+ +  C G
Sbjct: 102 PLLQPYPDWSFAKYDDCSG 120


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/37 (24%), Positives = 16/37 (43%)
 Frame = +2

Query: 89  SSLKLGLNITNLGNLSERLPKWQNEFQITANKLKQLP 199
           SSL    N +N  N +     +  +     N ++Q+P
Sbjct: 83  SSLSNNYNYSNYNNYNNNYNNYNKKLYYNINYIEQIP 119


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +2

Query: 521 KCVLVYMVRGVNFREI 568
           +CV +  ++G+N RE+
Sbjct: 284 QCVKISALKGINLREL 299


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,852
Number of Sequences: 438
Number of extensions: 3555
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)