Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_B22
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    27   3.0  
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch...    27   3.0  
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.9  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    26   3.9  
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom...    25   9.1  
SPAC24B11.13 |hem3|SPAC806.01|hydroxymethylbilane synthase|Schiz...    25   9.1  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    25   9.1  
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo...    25   9.1  

>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 18/60 (30%), Positives = 24/60 (40%)
 Frame = +1

Query: 415 HRSQQKRWIQSPINDFNEKSGFPKMTNTAYRPKRTS*ELCPPFSASLVSSASGHRIRRPI 594
           H SQ K   Q P N        P +  +AY     +  L PP   S V ++SG    + I
Sbjct: 117 HPSQTKSTSQPPSNHLPAFQQIPPIHQSAYPQNNVAEVLMPPIPPS-VEASSGQNFNQGI 175


>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 747

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 18/68 (26%), Positives = 34/68 (50%)
 Frame = +2

Query: 110 LKACEEMLEVPTKSKTSLECVPARDRMDCLNYVQQRQADLVPVDPEDMYVASKIPNQDFV 289
           + + + + E     KTSL+CV    RM      +QR  D++P D  D++++  I N   +
Sbjct: 377 INSLKNIFEEDNLGKTSLKCVTILSRM-----FKQRNYDVLP-DVYDLFLSVNILNDMKI 430

Query: 290 VFQEYRTD 313
             + ++ D
Sbjct: 431 KDEAWQDD 438


>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/60 (23%), Positives = 26/60 (43%)
 Frame = +2

Query: 224 DLVPVDPEDMYVASKIPNQDFVVFQEYRTDEEPDAPFRYEAVIVVHKDLPINNLDQLKGL 403
           DL P+D +    +  + N   V+     TDE    P   E  + V   + +++ D + G+
Sbjct: 100 DLHPLDNDSTRTSKTLKNSSEVLTASKLTDEGNSKPLLEEGEVAVSSPILLDSKDVIMGV 159


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 594 NWSSDPVTTGRRYKTC*KRRTELSARSLWAICCVRHFREAAL 469
           N+S+     GRRY    + R EL   S W     +  RE++L
Sbjct: 418 NYSNQCANCGRRYGNDPESRKELDKHSDWHFRINKRIRESSL 459


>SPCPJ732.01 |vps5||retromer complex subunit
           Vps5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +3

Query: 279 KTS*YSKSTEPMKNLTHLSGTKQLSSFTKTYRLTIWISLKA*DPVTPESTETLDT 443
           +T+    S+ P+++    SG   L SFT  +  +        DP+  E+ +TLD+
Sbjct: 323 RTTLIESSSSPLRSGPSTSGL--LDSFTSAFHTSGSSKFSEQDPILIEAKDTLDS 375


>SPAC24B11.13 |hem3|SPAC806.01|hydroxymethylbilane
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 336

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 610 CPFQAELVFGSGDHWPTIQDL 548
           CP  A +VF +G H+ T+ DL
Sbjct: 107 CPLDA-IVFKAGSHYKTVADL 126


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 8/12 (66%), Positives = 12/12 (100%)
 Frame = +1

Query: 403 KILSHRSQQKRW 438
           KI+SH++Q+KRW
Sbjct: 361 KIVSHKNQRKRW 372


>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -3

Query: 340 VPERCVRF-FIGSVLLEYYEVLIGYL 266
           +P+  + + F GSV L YY VLI +L
Sbjct: 450 IPDTVLPYKFPGSVYLSYYGVLINFL 475


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,706,714
Number of Sequences: 5004
Number of extensions: 56036
Number of successful extensions: 161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)