Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_B22
         (633 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0336 - 16507661-16507753,16508061-16508158,16508311-165086...    29   3.1  
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914...    28   7.1  
01_03_0299 + 14776146-14776462,14778198-14778437,14779483-14779813     28   7.1  

>11_04_0336 -
           16507661-16507753,16508061-16508158,16508311-16508626,
           16508699-16508891,16508990-16509030
          Length = 246

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 610 CPFQAELVFGSGDHWPTIQDLLKKEDRALSSFSLG-DMLC 494
           C   AE V   G+HWPT+Q L+  +    S    G  +LC
Sbjct: 122 CKVPAEDVDEDGNHWPTVQALVSAKPNDFSVTEEGWHLLC 161


>10_06_0105 - 10790092-10790323,10791092-10791234,10791322-10791429,
            10791796-10791903,10793133-10797686,10798347-10798461,
            10799597-10799724,10799843-10800043,10800158-10800227,
            10801233-10801314,10801433-10801556,10801761-10801778
          Length = 1960

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +2

Query: 65   YAAKSSYKLCVPAQHLKACEEMLEVPTKSKTSLECVPARDR 187
            ++ +  +   VP+++L+ CE  LE  +  KTS+E +    R
Sbjct: 1748 FSEQGEHARSVPSKNLEECEPSLENHSTGKTSIEDISMEHR 1788


>01_03_0299 + 14776146-14776462,14778198-14778437,14779483-14779813
          Length = 295

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 2   LVALTMAFRHLVLIALTCVSVYAAKSSY 85
           +VAL  AF  LVL+ LT ++++ A S Y
Sbjct: 268 VVALIAAFADLVLLMLTILTIHKASSYY 295


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,446,264
Number of Sequences: 37544
Number of extensions: 360042
Number of successful extensions: 879
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)