Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_B20
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    31   0.100
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    30   0.23 
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    29   0.40 
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    27   2.1  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    27   2.8  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    27   2.8  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.8  
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ...    26   5.0  
SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces pom...    25   8.7  
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ...    25   8.7  

>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 31.5 bits (68), Expect = 0.100
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
 Frame = +2

Query: 131 EKSNGAKTNESLNRNTNLSIQPKIVHYST*VSPKDLHYKRSCATRIQRIPATFTRSSVYS 310
           +  N  KT  S     +   +  +    T VS  ++HY R      +++P TF+   V S
Sbjct: 605 QNKNPRKTAISRKPTLSSMFKSSLSQLMTTVSSTNVHYIRCIKPNEEKLPWTFSPPMVLS 664

Query: 311 RYVLRCMVPIRELVASIGH--RF-YEQFAH 391
           + +  C V     ++S+G   RF YE+FAH
Sbjct: 665 Q-LRACGVFETIRISSLGFPARFSYEEFAH 693


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
 Frame = +2

Query: 137 SNGAKTNESLNRNTNLS----IQPKIVHYST*VSPKDLHYKRSCATRIQRIPATFTRSSV 304
           +N   T + LN+   ++    I+  ++HY+  +S  +L        RIQ+ P    + S+
Sbjct: 612 TNAVDTRQELNQQLRVAVNGYIETAVIHYTECLSIGNLESITEFQNRIQKFPELRQQISL 671

Query: 305 Y--SRYVLRCMV-PIRELVASIGHRFYE 379
           Y    +++   +  IRE V S    FYE
Sbjct: 672 YLSETWIIELFLQAIREEVVSKFQNFYE 699


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = +3

Query: 186 PFNRKSSTTRHRSPLKISTTNGLAPPAFNGFPRPLPGRRSTHATSYGAWYPFENSLPPSG 365
           PF+   S+  H + L  +     APP F  +  P+   +   + S+   +P   S  PS 
Sbjct: 315 PFSPNVSSHPHMAFLPATVPTHSAPPGFVPYDFPITNDKMYPSPSFQEEFP-STSKSPSA 373

Query: 366 IGSTSNLPI 392
              +SN P+
Sbjct: 374 TPGSSNAPV 382


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +3

Query: 339 FENSLPPSGIG--STSNLPIPLSLKFSNSSGNVGYFVSSADLL 461
           F+ SL PS     S+++ P P++   SNS  +V    SSAD L
Sbjct: 136 FQFSLTPSTTPPPSSASAPFPINSNISNSLDSVSQHNSSADSL 178


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +1

Query: 178 KSIHSTENRPLLDIGLP*RSPLQTVLRHPHSTDSRDLY 291
           K+  S +N+ +  +     + L T+LRHP+  ++RD+Y
Sbjct: 176 KAAQSEKNKEIRTVR---EAALSTLLRHPYICEARDVY 210


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +3

Query: 252 LAPPAFNGFPR--PLPGRRSTHATSYGAWYPFENSLPPSGIGSTSNLPIPLSLK 407
           L P   +GF +   +PG+         A YP E S PP G G   N+P  ++L+
Sbjct: 832 LKPVDLSGFEKLEDIPGKVVVFERKICAVYPVEGSSPPLGEG--LNVPAIITLE 883


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 11/98 (11%)
 Frame = +3

Query: 168 TETQIYPF-NRKSSTTRHRSPLKISTTNGLAPPAFNGFP----RPLPGRRSTHATSYG-- 326
           T T I P  N  +  T    P   S+T+   PPA          PLP   ++  TS    
Sbjct: 287 TSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIP 346

Query: 327 ----AWYPFENSLPPSGIGSTSNLPIPLSLKFSNSSGN 428
               +  P   ++PP+   STS  P P S   + +S +
Sbjct: 347 PTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSS 384



 Score = 25.8 bits (54), Expect = 5.0
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
 Frame = +3

Query: 174 TQIYPFNRKSSTTRHRSPLKISTTNGLAPPAFNGFPRPLPGRRSTHATSY----GAWYPF 341
           T I P    +ST+    P+  ++T+       N  P P      T +TS      +  P 
Sbjct: 245 TPITPTVPPTSTSSTSIPIPPTSTSSTDT---NSSPLPTTSTSCTTSTSIPPTGNSTTPV 301

Query: 342 ENSLPPSGIGSTSNLPIPLSLKFSNSSGN 428
             ++PP+   STS  P P S   + +S +
Sbjct: 302 TPTVPPTSTSSTSTPPPPASTSSTGTSSS 330


>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
           subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 258 PPAFNGFPRPLPGRRSTHATSY 323
           P  F  F  PLPG+ +TH T Y
Sbjct: 116 PDMFKWFQHPLPGQEATH-TDY 136


>SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 217

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 360 SGIGSTSNLPIPLSLKFSNSSGNVG 434
           S I  TS+LP+P S  F     N+G
Sbjct: 61  STIQRTSSLPVPSSSNFKERLNNIG 85


>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
           subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +3

Query: 336 PFENSLPPSGIGSTSNLPIPLSLKFSNSSGNVGYFVSSADL 458
           P    +PP  + + +  P+P  L FSN+   +  F    +L
Sbjct: 225 PLTGQVPPKFLDTIAIFPLPNLLGFSNTPKRLSRFFKRREL 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,567,218
Number of Sequences: 5004
Number of extensions: 55212
Number of successful extensions: 164
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)