Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_B20
(608 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0432 - 15861997-15862096,15862449-15862519,15862612-158627... 30 1.6
07_01_1088 + 9995442-9997736 29 3.8
02_01_0129 - 934865-935152,935241-935490,935965-936105,937175-93... 29 3.8
01_06_1682 - 39130696-39131705,39132355-39132583 29 3.8
07_01_0675 + 5055842-5055950,5056036-5056193,5056276-5057067,505... 28 5.0
06_03_0082 + 16363742-16364632 28 5.0
10_06_0024 - 9733994-9734093,9734814-9734870,9734954-9735040,973... 28 6.7
11_06_0768 + 27129007-27129038,27129140-27129220,27129723-271300... 27 8.8
10_01_0167 + 1876793-1877402,1877423-1877642,1877760-1879534,188... 27 8.8
09_06_0172 + 21329904-21331512,21331595-21331740,21332333-213325... 27 8.8
07_03_0923 - 22617627-22617860,22618486-22618542,22618612-226187... 27 8.8
05_07_0110 - 27747789-27747897,27748375-27748568,27748811-277488... 27 8.8
04_02_0033 - 8997041-8997754 27 8.8
>04_03_0432 -
15861997-15862096,15862449-15862519,15862612-15862774,
15865311-15865535,15866156-15866403,15866489-15866618,
15866716-15866975
Length = 398
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 369 GSTSNLPIPLSLKFSNSSGNVGYFVSSADLLIHDLIT 479
G T++LP S+ + + S GYFVS DLL D ++
Sbjct: 164 GCTTSLPCEYSVTYGDGSSTTGYFVS--DLLQFDQVS 198
>07_01_1088 + 9995442-9997736
Length = 764
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Frame = +1
Query: 328 HGT-HSRTRCLHRASVLRAICPSHC-----HLSLVILREMS 432
HG H+ T C+ R+S L CP+ C H + V REMS
Sbjct: 514 HGREHATTMCIERSSGLNNRCPTWCEKSIHHKNAVQCREMS 554
>02_01_0129 -
934865-935152,935241-935490,935965-936105,937175-937707
Length = 403
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 258 PPAFNGFPRPLP-GRRSTHATSYGAWYPFENSLPP 359
PP P+PLP G + AT+ G W P LPP
Sbjct: 30 PPPHQPQPQPLPCGAAPSDATA-GRWVPTREPLPP 63
>01_06_1682 - 39130696-39131705,39132355-39132583
Length = 412
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +3
Query: 186 PFNRKSSTTRHRSPLKISTTNGLAPPAFNGFPRPLPGRRSTHATSYGAWYPFENSLPPS 362
P+ S ++SP N +PP FN FP P S +SY + P++ + P S
Sbjct: 193 PYQYPSPPFNYKSP---PLPNQFSPPPFNKFPPPSHQYPSPPQSSYHSPPPYQYTPPNS 248
>07_01_0675 +
5055842-5055950,5056036-5056193,5056276-5057067,
5057544-5057760,5058280-5058449,5058986-5059630
Length = 696
Score = 28.3 bits (60), Expect = 5.0
Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = -2
Query: 424 PEELLNLSDSGMGKLL-VEPMPDGGNE-FSNGYHAP*DVA*VDRRPGKGRGNPLNAGGAR 251
P + L G G L + P PDG N F N VA V P +G G PL A
Sbjct: 205 PASGMCLERLGNGSYLNMAPHPDGSNRVFLNNQAGKVFVATV---PAQGSGKPLQVDAAT 261
Query: 250 PFV 242
PF+
Sbjct: 262 PFL 264
>06_03_0082 + 16363742-16364632
Length = 296
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 415 LLNLSDSGMGKLLVEPMPDGGNEFSNG 335
LL LSDS G L+EP PD ++ G
Sbjct: 264 LLELSDSSGGGALLEPFPDDDDDDDEG 290
>10_06_0024 -
9733994-9734093,9734814-9734870,9734954-9735040,
9736438-9736982,9737086-9737271
Length = 324
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = -1
Query: 218 MSSSGRFSVEWIDLCFGXXXXXXXXXXXXXXHRSVTYWTHFKI 90
M+SSG +V + +C+ +VTYWT+F +
Sbjct: 161 MASSGVAAVAHVAVCWALVHKAGMGSKGAALSGAVTYWTNFAV 203
>11_06_0768 +
27129007-27129038,27129140-27129220,27129723-27130089,
27130165-27130255,27130515-27130595,27130764-27131830,
27132060-27132071,27132465-27133209,27133210-27135244,
27135712-27135787,27135925-27136029,27137080-27137166
Length = 1592
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/78 (21%), Positives = 35/78 (44%)
Frame = +3
Query: 117 RTMSKKNQMVRKQMNH*TETQIYPFNRKSSTTRHRSPLKISTTNGLAPPAFNGFPRPLPG 296
+++++ ++++R +T P + R + +TT +A +FN PLP
Sbjct: 605 KSITELDELIRHSPEQSQKTNDAPLEEDNLHLRQKDGSHGTTTYCIASESFNA---PLPA 661
Query: 297 RRSTHATSYGAWYPFENS 350
R H T ++ P N+
Sbjct: 662 NRVNHITDSISFIPASNT 679
>10_01_0167 +
1876793-1877402,1877423-1877642,1877760-1879534,
1880019-1880199,1881313-1881529
Length = 1000
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Frame = +3
Query: 339 FENSLP-PSGIGSTSNLPIPLSLKFSNSSGN----VGYFVSSADLLI 464
F NSL P GIG+ NL + + SNSS + +G S DL I
Sbjct: 655 FGNSLKLPDGIGNMRNLQVLTGINISNSSASTVPELGELTSLRDLKI 701
>09_06_0172 +
21329904-21331512,21331595-21331740,21332333-21332556,
21333689-21334448
Length = 912
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +3
Query: 246 NGLAPPAF--NGFPRPLPGRRSTHATSYGAWYPFENSLPPSGIGSTS 380
N APP G+ P G S + +YG +Y + PP+ I STS
Sbjct: 293 NPQAPPLGYGGGYGYPPQGSSSYNQYAYGGYYGGASPPPPADIPSTS 339
>07_03_0923 -
22617627-22617860,22618486-22618542,22618612-22618768,
22618875-22619014,22619642-22619777,22619874-22620142,
22620272-22620492,22620648-22620707,22620859-22620915,
22621008-22621405,22621929-22622000,22622098-22622169,
22622246-22622317,22622574-22622645,22622738-22622867,
22623065-22623170
Length = 750
Score = 27.5 bits (58), Expect = 8.8
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Frame = +3
Query: 225 PLKISTTNGLAPPAF--NGFPRPLPGRRS--THATSYGAWYPFENSLPPSGIGSTSNLPI 392
P ST GLA F N PLP T TS PF S+ PS + + P+
Sbjct: 139 PDAFSTLTGLANLDFSSNNLTGPLPPSMGNLTALTSLKDGNPFNTSIAPSALPPAAPTPL 198
Query: 393 P 395
P
Sbjct: 199 P 199
>05_07_0110 -
27747789-27747897,27748375-27748568,27748811-27748888,
27749925-27750064,27750197-27750269
Length = 197
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/64 (28%), Positives = 27/64 (42%)
Frame = +3
Query: 102 CPVCNRTMSKKNQMVRKQMNH*TETQIYPFNRKSSTTRHRSPLKISTTNGLAPPAFNGFP 281
CP+C+ +++ + +NH T Y F HRS +TTN A P + F
Sbjct: 73 CPICS------DKIAKDMLNHITVQHGYLFKVLLGGGGHRSNNSSNTTNISADPLLSSFG 126
Query: 282 RPLP 293
P
Sbjct: 127 LSFP 130
>04_02_0033 - 8997041-8997754
Length = 237
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +3
Query: 192 NRKSSTTRHRSPLKISTTNGLAPPAFNGFPRPLPGRRSTHATSYG 326
+ K T RSP ++ L PP P +P RRS A + G
Sbjct: 192 SEKEGATESRSPPLMNWKRHLTPPPIITAPGQIPRRRSKIARALG 236
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,801,092
Number of Sequences: 37544
Number of extensions: 383338
Number of successful extensions: 957
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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