Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_B20
(608 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 24 1.3
AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein. 23 2.3
AF000632-1|AAC61894.1| 452|Apis mellifera major royal jelly pro... 23 3.1
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 22 4.1
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 22 4.1
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.1
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.1
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.1
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.1
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.1
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.1
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.1
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.1
AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor pr... 21 7.1
AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein ... 21 9.4
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 21 9.4
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 23.8 bits (49), Expect = 1.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 454 SAEETK*PTFPEELLNLSDSGMGKLLV 374
S E K PT E LLN + M KL++
Sbjct: 630 SMESFKPPTLTESLLNRHNEDMEKLMM 656
>AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein.
Length = 429
Score = 23.0 bits (47), Expect = 2.3
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +1
Query: 346 TRCLHRASVLRAICPSHCHLSLVILREMSVTLFLRRISSFM 468
T C H VL+ + S H + + V + R +SSF+
Sbjct: 64 TPCKHPVIVLQDVAFSDLHALVEFIYHGEVNVHQRSLSSFL 104
>AF000632-1|AAC61894.1| 452|Apis mellifera major royal jelly
protein MRJP2 protein.
Length = 452
Score = 22.6 bits (46), Expect = 3.1
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +2
Query: 116 QNDVKEKSNGAKTNESLNRNTN 181
QND +K+N N N N N
Sbjct: 429 QNDNNQKNNKKNANNQKNNNQN 450
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 22.2 bits (45), Expect = 4.1
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +3
Query: 84 ILYFKVCPVCNRTMSKKNQMVRKQMNH*TETQIYPFNRKSSTTRHRSPL 230
+L K+ V T+ R +MN T + ++K T RH S L
Sbjct: 348 VLKSKIGQVFLITILDSKVSARIEMNEDDNTSLVSLDKKQYTWRHTSVL 396
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 22.2 bits (45), Expect = 4.1
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = +3
Query: 270 NGFPRPLPGRRSTHATSYGAWYPFENSLPPSGIGSTSNLPIPLS-LKFSNSSG 425
NG+ R LPG SY S P SG S +S ++ S SSG
Sbjct: 208 NGYGRHLPGHAQMGRPSYTTATMATTSTPGSGSLPASPADSGVSDVESSTSSG 260
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -1
Query: 344 LEWVPCTVRRSVSRP 300
L+W+PC +R +SRP
Sbjct: 300 LQWLPCLLR--MSRP 312
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -1
Query: 344 LEWVPCTVRRSVSRP 300
L+W+PC +R +SRP
Sbjct: 300 LQWLPCLLR--MSRP 312
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -1
Query: 344 LEWVPCTVRRSVSRP 300
L+W+PC +R +SRP
Sbjct: 300 LQWLPCLLR--MSRP 312
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -1
Query: 344 LEWVPCTVRRSVSRP 300
L+W+PC +R +SRP
Sbjct: 300 LQWLPCLLR--MSRP 312
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -1
Query: 344 LEWVPCTVRRSVSRP 300
L+W+PC +R +SRP
Sbjct: 300 LQWLPCLLR--MSRP 312
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -1
Query: 344 LEWVPCTVRRSVSRP 300
L+W+PC +R +SRP
Sbjct: 300 LQWLPCLLR--MSRP 312
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 7.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -1
Query: 344 LEWVPCTVRRSVSRP 300
L+W+PC +R +SRP
Sbjct: 368 LQWLPCLLR--MSRP 380
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 7.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -1
Query: 344 LEWVPCTVRRSVSRP 300
L+W+PC +R +SRP
Sbjct: 368 LQWLPCLLR--MSRP 380
>AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor
protein.
Length = 501
Score = 21.4 bits (43), Expect = 7.1
Identities = 11/43 (25%), Positives = 18/43 (41%)
Frame = +3
Query: 156 MNH*TETQIYPFNRKSSTTRHRSPLKISTTNGLAPPAFNGFPR 284
+N + + P + +HRS +T +G F G PR
Sbjct: 263 VNRQLNSDVQPGHGSPPVKQHRSSSASTTCSGHTVRCFTGGPR 305
>AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein 1
protein.
Length = 500
Score = 21.0 bits (42), Expect = 9.4
Identities = 7/21 (33%), Positives = 11/21 (52%)
Frame = +3
Query: 102 CPVCNRTMSKKNQMVRKQMNH 164
C VC++T + Q+V H
Sbjct: 178 CTVCSKTFIQSGQLVIHMRTH 198
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 21.0 bits (42), Expect = 9.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 382 ICPSHCHLSLVILREMSVTLFLRRISS 462
I P HL + +E VTL ++ ISS
Sbjct: 748 ISPDSRHLVTLDKQETGVTLVVQEISS 774
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,271
Number of Sequences: 438
Number of extensions: 4151
Number of successful extensions: 16
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -